Analysis of interatomic Contacts of Structural Units in PDB entry:
3JS4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JS4 entry

There are 4 chains in PDB entry 3JS4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 206
B
 SER 0LEU 206
C
 MET 1LEU 206
D
 MET 1LEU 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3JS4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 27Right-handed alpha
Helix 2
2
A
27 40Right-handed alpha
Helix 3
3
A
49 51Right-handed 310
Helix 4
4
A
52 63Right-handed alpha
Helix 5
5
A
64 66Right-handed 310
Helix 6
6
A
67 86Right-handed alpha
Helix 7
7
A
96 98Right-handed 310
Helix 8
8
A
99 108Right-handed alpha
Helix 9
9
A
109 124Right-handed alpha
Helix 10
10
A
151 155Right-handed 310
Helix 11
11
A
167 170Right-handed 310
Helix 12
12
A
171 176Right-handed alpha
Helix 13
13
A
178 190Right-handed alpha
Helix 14
14
A
192 203Right-handed alpha
Helix 15
15
B
17 27Right-handed alpha
Helix 16
16
B
27 40Right-handed alpha
Helix 17
17
B
49 51Right-handed 310
Helix 18
18
B
52 63Right-handed alpha
Helix 19
19
B
64 66Right-handed 310
Helix 20
20
B
67 86Right-handed alpha
Helix 21
21
B
96 108Right-handed alpha
Helix 22
22
B
109 124Right-handed alpha
Helix 23
23
B
151 155Right-handed 310
Helix 24
24
B
167 170Right-handed 310
Helix 25
25
B
171 176Right-handed alpha
Helix 26
26
B
178 190Right-handed alpha
Helix 27
27
B
192 203Right-handed alpha
Helix 28
28
C
17 27Right-handed alpha
Helix 29
29
C
27 40Right-handed alpha
Helix 30
30
C
49 51Right-handed 310
Helix 31
31
C
52 62Right-handed alpha
Helix 32
32
C
63 66Right-handed 310
Helix 33
33
C
67 86Right-handed alpha
Helix 34
34
C
96 108Right-handed alpha
Helix 35
35
C
109 124Right-handed alpha
Helix 36
36
C
151 155Right-handed 310
Helix 37
37
C
167 170Right-handed 310
Helix 38
38
C
171 176Right-handed alpha
Helix 39
39
C
178 190Right-handed alpha
Helix 40
40
C
192 203Right-handed alpha
Helix 41
41
D
17 27Right-handed alpha
Helix 42
42
D
27 41Right-handed alpha
Helix 43
43
D
49 51Right-handed 310
Helix 44
44
D
52 62Right-handed alpha
Helix 45
45
D
63 66Right-handed 310
Helix 46
46
D
67 86Right-handed alpha
Helix 47
47
D
96 98Right-handed 310
Helix 48
48
D
99 108Right-handed alpha
Helix 49
49
D
109 124Right-handed alpha
Helix 50
50
D
151 155Right-handed 310
Helix 51
51
D
167 170Right-handed 310
Helix 52
52
D
171 176Right-handed alpha
Helix 53
53
D
178 190Right-handed alpha
Helix 54
54
D
192 203Right-handed alpha
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There are 4 sheets in PDB entry 3JS4. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
128 135anti-parallel
Strand 3
A
158 165anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 147first strand
Strand 2
B
128 135anti-parallel
Strand 3
B
158 165anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 147first strand
Strand 2
C
128 135anti-parallel
Strand 3
C
158 165anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 147first strand
Strand 2
D
128 135anti-parallel
Strand 3
D
158 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il