Analysis of interatomic Contacts of Structural Units in PDB entry:
3JS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JS6 entry

There is 1 chain in PDB entry 3JS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3JS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 74Right-handed alpha
Helix 2
2
A
85 88Right-handed 310
Helix 3
3
A
89 105Right-handed alpha
Helix 4
4
A
121 125Right-handed 310
Helix 5
5
A
127 138Right-handed alpha
Helix 6
6
A
162 170Right-handed alpha
Helix 7
8
A
208 211Right-handed 310
Helix 8
9
A
217 229Right-handed alpha
Helix 9
10
A
239 245Right-handed alpha
Helix 10
11
A
262 285Right-handed alpha
Helix 11
12
A
300 312Right-handed alpha
Helix 12
13
A
321 323Right-handed 310
Helix 13
14
A
324 343Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3JS6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 28first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
4 11anti-parallel
Strand 4
A
111 120parallel
Strand 5
A
148 161parallel
Strand 6
A
141 145anti-parallel
Strand 7
A
52 56anti-parallel
Strand 8
A
64 66anti-parallel
Strand 9
A
30 33anti-parallel
Strand 10
A
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
196 202anti-parallel
Strand 3
A
212 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
196 202anti-parallel
Strand 3
A
185 191anti-parallel
Strand 4
A
293 297parallel
Strand 5
A
316 317parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il