Analysis of interatomic Contacts of Structural Units in PDB entry:
3JS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JS8 entry

There is 1 chain in PDB entry 3JS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3JS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 53Right-handed alpha
Helix 2
2
A
109 120Right-handed alpha
Helix 3
3
A
134 141Right-handed alpha
Helix 4
4
A
163 166Right-handed 310
Helix 5
5
A
192 199Right-handed 310
Helix 6
6
A
229 234Right-handed alpha
Helix 7
7
A
243 251Right-handed alpha
Helix 8
8
A
289 294Right-handed alpha
Helix 9
9
A
296 308Right-handed alpha
Helix 10
10
A
311 313Right-handed 310
Helix 11
11
A
314 333Right-handed alpha
Helix 12
12
A
342 347Right-handed alpha
Helix 13
13
A
369 391Right-handed alpha
Helix 14
14
A
409 413Right-handed 310
Helix 15
15
A
451 467Right-handed alpha
Helix 16
16
A
492 498Right-handed alpha
Helix 17
17
A
498 504Right-handed alpha
Helix 18
18
A
509 512Right-handed 310
Helix 19
19
A
513 525Right-handed alpha
Helix 20
20
A
532 539Right-handed alpha
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There are 5 sheets in PDB entry 3JS8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
27 34anti-parallel
Strand 3
A
79 83parallel
Strand 4
A
55 59parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
100 105anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
122 123anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
100 105anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
168 177anti-parallel
Strand 5
A
182 189anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
337 341parallel
Strand 3
A
219 225anti-parallel
Strand 4
A
266 272anti-parallel
Strand 5
A
253 258anti-parallel
Strand 6
A
400 405anti-parallel
Strand 7
A
437 445anti-parallel
Strand 8
A
357 358anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
337 341parallel
Strand 3
A
219 225anti-parallel
Strand 4
A
266 272anti-parallel
Strand 5
A
253 258anti-parallel
Strand 6
A
400 405anti-parallel
Strand 7
A
437 445anti-parallel
Strand 8
A
361 365anti-parallel
Strand 9
A
472 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il