Analysis of interatomic Contacts of Structural Units in PDB entry:
3JSO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JSO entry

There are 4 chains in PDB entry 3JSO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 199
B
 LYS 2LEU 202
C
 T 1 A 22
D
 T 1 A 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3JSO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 23Right-handed alpha
Helix 2
2
A
27 36Right-handed alpha
Helix 3
3
A
39 54Right-handed alpha
Helix 4
4
A
101 105Right-handed 310
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
B
5 23Right-handed alpha
Helix 7
7
B
27 36Right-handed alpha
Helix 8
8
B
39 53Right-handed alpha
Helix 9
9
B
101 105Right-handed 310
Helix 10
10
B
120 124Right-handed 310
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There are 5 sheets in PDB entry 3JSO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
66 68anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
153 161anti-parallel
Strand 4
A
76 83parallel
Strand 5
A
111 116parallel
Strand 6
A
130 135anti-parallel
Strand 7
A
186 197anti-parallel
Strand 8
B
186 197anti-parallel
Strand 9
B
144 149anti-parallel
Strand 10
B
153 161anti-parallel
Strand 11
B
164 168anti-parallel
Strand 12
B
177 180anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
76 83anti-parallel
Strand 3
A
153 161parallel
Strand 4
A
144 149anti-parallel
Strand 5
A
186 197anti-parallel
Strand 6
B
186 197anti-parallel
Strand 7
B
130 134anti-parallel
Strand 8
B
111 116anti-parallel
Strand 9
B
76 83parallel
Strand 10
B
96 98anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
76 83anti-parallel
Strand 3
B
153 161parallel
Strand 4
B
164 168anti-parallel
Strand 5
B
177 180anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
66 68anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il