Analysis of interatomic Contacts of Structural Units in PDB entry:
3JSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JSY entry

There are 2 chains in PDB entry 3JSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 9ILE 221
B
 MET 9ASP 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3JSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 27Right-handed alpha
Helix 2
2
A
39 51Right-handed alpha
Helix 3
3
A
60 75Right-handed alpha
Helix 4
4
A
77 87Right-handed 310
Helix 5
5
A
99 110Right-handed alpha
Helix 6
6
A
139 147Right-handed alpha
Helix 7
7
A
174 184Right-handed alpha
Helix 8
8
A
206 214Right-handed alpha
Helix 9
9
B
10 25Right-handed alpha
Helix 10
10
B
39 51Right-handed alpha
Helix 11
11
B
60 76Right-handed alpha
Helix 12
12
B
77 87Right-handed 310
Helix 13
13
B
99 110Right-handed alpha
Helix 14
14
B
139 147Right-handed alpha
Helix 15
15
B
174 184Right-handed alpha
Helix 16
16
B
206 211Right-handed alpha
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There are 8 sheets in PDB entry 3JSY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
29 34anti-parallel
Strand 4
A
194 200anti-parallel
Strand 5
A
203 205anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
189 191anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
164 167anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
157 160anti-parallel
Strand 3
A
151 154anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
91 96anti-parallel
Strand 3
B
29 34anti-parallel
Strand 4
B
194 200anti-parallel
Strand 5
B
203 205anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
189 191anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
164 167anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
157 160anti-parallel
Strand 3
B
151 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il