Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JTD entry

There are 3 chains in PDB entry 3JTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 773LEU 837
B
 ALA 1ALA 156
C
 PRO 1LYS 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3JTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
774 823Right-handed alpha
Helix 2
2
A
824 832Right-handed alpha
Helix 3
3
B
13 28Right-handed alpha
Helix 4
4
B
36 48Right-handed alpha
Helix 5
5
B
55 62Right-handed alpha
Helix 6
6
B
68 80Right-handed alpha
Helix 7
7
B
85 95Right-handed alpha
Helix 8
8
B
106 116Right-handed alpha
Helix 9
9
B
121 130Right-handed alpha
Helix 10
10
B
140 149Right-handed alpha
Helix 11
11
C
4 22Right-handed alpha
Helix 12
12
C
32 40Right-handed alpha
Helix 13
13
C
45 51Right-handed alpha
Helix 14
14
C
64 76Right-handed alpha
Helix 15
15
C
82 92Right-handed alpha
Helix 16
16
C
103 113Right-handed alpha
Helix 17
17
C
118 129Right-handed alpha
Helix 18
18
C
141 150Right-handed alpha
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There are 3 sheets in PDB entry 3JTD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
138 139anti-parallel
Strand 3
B
134 135anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 29first strand
Strand 2
C
62 63anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
138 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il