Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JTF entry

There are 2 chains in PDB entry 3JTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 75ILE 199
B
 GLU 75ILE 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3JTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 82Right-handed alpha
Helix 2
2
A
86 88Right-handed 310
Helix 3
3
A
96 107Right-handed alpha
Helix 4
4
A
129 136Right-handed 310
Helix 5
5
A
141 146Right-handed 310
Helix 6
6
A
157 167Right-handed alpha
Helix 7
7
A
188 198Right-handed alpha
Helix 8
8
B
77 82Right-handed alpha
Helix 9
9
B
86 88Right-handed 310
Helix 10
10
B
96 107Right-handed alpha
Helix 11
11
B
129 136Right-handed 310
Helix 12
12
B
141 146Right-handed alpha
Helix 13
13
B
157 168Right-handed alpha
Helix 14
14
B
188 198Right-handed alpha
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There are 4 sheets in PDB entry 3JTF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
182 187anti-parallel
Strand 3
A
172 176anti-parallel
Strand 4
A
151 153parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
111 115parallel
Strand 3
A
122 127anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
182 187anti-parallel
Strand 3
B
172 176anti-parallel
Strand 4
B
151 153parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
111 115parallel
Strand 3
B
122 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il