Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JTJ entry

There is 1 chain in PDB entry 3JTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3JTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 21Right-handed 310
Helix 2
2
A
29 40Right-handed alpha
Helix 3
3
A
51 61Right-handed alpha
Helix 4
4
A
74 87Right-handed alpha
Helix 5
5
A
105 119Right-handed alpha
Helix 6
6
A
132 137Right-handed alpha
Helix 7
7
A
163 170Right-handed alpha
Helix 8
8
A
189 196Right-handed alpha
Helix 9
9
A
201 208Right-handed alpha
Helix 10
10
A
211 217Right-handed alpha
Helix 11
11
A
236 248Right-handed alpha
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There are 3 sheets in PDB entry 3JTJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
44 49parallel
Strand 3
A
4 9parallel
Strand 4
A
93 96parallel
Strand 5
A
179 188anti-parallel
Strand 6
A
123 129anti-parallel
Strand 7
A
222 225parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
27 28anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
152 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il