Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JTM entry

There is 1 chain in PDB entry 3JTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 28ARG 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3JTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 46Right-handed alpha
Helix 2
2
A
55 58Right-handed 310
Helix 3
3
A
59 66Right-handed alpha
Helix 4
4
A
81 87Right-handed alpha
Helix 5
5
A
104 111Right-handed alpha
Helix 6
6
A
128 135Right-handed alpha
Helix 7
7
A
146 164Right-handed alpha
Helix 8
8
A
164 174Right-handed alpha
Helix 9
9
A
178 184Right-handed alpha
Helix 10
10
A
200 211Right-handed alpha
Helix 11
11
A
212 214Right-handed 310
Helix 12
12
A
226 234Right-handed alpha
Helix 13
13
A
240 245Right-handed alpha
Helix 14
14
A
246 248Right-handed 310
Helix 15
15
A
266 273Right-handed alpha
Helix 16
16
A
284 288Right-handed 310
Helix 17
17
A
289 300Right-handed alpha
Helix 18
18
A
319 323Right-handed 310
Helix 19
19
A
333 336Right-handed 310
Helix 20
20
A
337 358Right-handed alpha
Helix 21
21
A
362 364Right-handed 310
Helix 22
22
A
375 378Right-handed 310
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There are 2 sheets in PDB entry 3JTM. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
31 35parallel
Strand 3
A
92 95parallel
Strand 4
A
116 119parallel
Strand 5
A
138 141parallel
Strand 6
A
366 369anti-parallel
Strand 7
A
372 373anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
216 220parallel
Strand 3
A
193 197parallel
Strand 4
A
250 253parallel
Strand 5
A
278 281parallel
Strand 6
A
304 307parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il