Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JTW entry

There are 2 chains in PDB entry 3JTW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 177
B
 ALA 2GLY 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3JTW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
38 46Right-handed alpha
Helix 3
3
A
54 64Right-handed alpha
Helix 4
4
A
96 106Right-handed alpha
Helix 5
5
A
117 127Right-handed alpha
Helix 6
6
B
24 30Right-handed alpha
Helix 7
7
B
38 46Right-handed alpha
Helix 8
8
B
54 61Right-handed alpha
Helix 9
9
B
96 105Right-handed alpha
Helix 10
10
B
117 127Right-handed alpha
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There are 4 sheets in PDB entry 3JTW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
75 79parallel
Strand 3
A
47 53parallel
Strand 4
A
111 116parallel
Strand 5
A
5 12parallel
Strand 6
A
132 138parallel
Strand 7
A
169 176anti-parallel
Strand 8
A
158 166anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
146 147anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
75 79parallel
Strand 3
B
47 53parallel
Strand 4
B
111 116parallel
Strand 5
B
5 12parallel
Strand 6
B
132 138parallel
Strand 7
B
169 176anti-parallel
Strand 8
B
158 166anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
146 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il