Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JTX entry

There are 4 chains in PDB entry 3JTX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0SER 243
A
 ARG 245ARG 395
B
 MSE 1SER 243
B
 ARG 245ARG 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3JTX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 8Right-handed alpha
Helix 2
2
A
11 20Right-handed alpha
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
55 60Right-handed 310
Helix 5
5
A
67 82Right-handed alpha
Helix 6
6
A
98 111Right-handed alpha
Helix 7
7
A
129 139Right-handed alpha
Helix 8
8
A
156 160Right-handed 310
Helix 9
9
A
161 167Right-handed alpha
Helix 10
10
A
185 200Right-handed alpha
Helix 11
11
A
221 229Right-handed alpha
Helix 12
12
A
248 252Right-handed 310
Helix 13
13
A
259 274Right-handed alpha
Helix 14
14
A
278 291Right-handed alpha
Helix 15
15
A
292 314Right-handed alpha
Helix 16
16
A
336 349Right-handed alpha
Helix 17
17
A
356 359Right-handed 310
Helix 18
18
A
379 394Right-handed alpha
Helix 19
19
B
1 6Right-handed alpha
Helix 20
20
B
11 21Right-handed alpha
Helix 21
21
B
44 54Right-handed alpha
Helix 22
22
B
55 60Right-handed 310
Helix 23
23
B
67 82Right-handed alpha
Helix 24
24
B
98 111Right-handed alpha
Helix 25
25
B
129 139Right-handed alpha
Helix 26
26
B
156 160Right-handed 310
Helix 27
27
B
161 166Right-handed alpha
Helix 28
28
B
185 200Right-handed alpha
Helix 29
29
B
221 229Right-handed alpha
Helix 30
30
B
248 252Right-handed 310
Helix 31
31
B
259 274Right-handed alpha
Helix 32
32
B
278 291Right-handed alpha
Helix 33
33
B
292 314Right-handed alpha
Helix 34
34
B
336 349Right-handed alpha
Helix 35
35
B
356 359Right-handed 310
Helix 36
36
B
379 395Right-handed alpha
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There are 6 sheets in PDB entry 3JTX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
350 351parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
236 241anti-parallel
Strand 4
A
202 206parallel
Strand 5
A
168 174parallel
Strand 6
A
121 126parallel
Strand 7
A
142 147parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 331first strand
Strand 2
A
371 375anti-parallel
Strand 3
A
353 354anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
350 351parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
254 258anti-parallel
Strand 3
B
236 241anti-parallel
Strand 4
B
202 206parallel
Strand 5
B
168 174parallel
Strand 6
B
121 126parallel
Strand 7
B
142 147parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 331first strand
Strand 2
B
371 375anti-parallel
Strand 3
B
353 354anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il