Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JTY entry

There are 4 chains in PDB entry 3JTY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 32	LEU 419
B	GLY 32	LEU 419
C	GLY 32	LEU 419
D	GLY 32	LEU 419

There are 3 helices in PDB entry 3JTY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	217	219	Right-handed 310
Helix 2	2	C	340	343	Right-handed 310
Helix 3	3	D	340	343	Right-handed 310

There are 12 sheets in PDB entry 3JTY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	52	first strand
Strand 2	A	61	74	anti-parallel
Strand 3	A	82	97	anti-parallel
Strand 4	A	119	131	anti-parallel
Strand 5	A	134	141	anti-parallel
Strand 6	A	159	167	anti-parallel
Strand 7	A	173	184	anti-parallel
Strand 8	A	207	216	anti-parallel
Strand 9	A	221	230	anti-parallel
Strand 10	A	234	247	anti-parallel
Strand 11	A	250	263	anti-parallel
Strand 12	A	273	285	anti-parallel
Strand 13	A	288	299	anti-parallel
Strand 14	A	329	338	anti-parallel
Strand 15	A	347	359	anti-parallel
Strand 16	A	367	379	anti-parallel
Strand 17	A	389	399	anti-parallel
Strand 18	A	406	418	anti-parallel
Strand 19	A	38	52	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	148	149	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	199	204	anti-parallel

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There are 19 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	52	first strand
Strand 2	B	61	74	anti-parallel
Strand 3	B	82	97	anti-parallel
Strand 4	B	119	131	anti-parallel
Strand 5	B	134	141	anti-parallel
Strand 6	B	159	167	anti-parallel
Strand 7	B	173	184	anti-parallel
Strand 8	B	207	216	anti-parallel
Strand 9	B	221	230	anti-parallel
Strand 10	B	234	246	anti-parallel
Strand 11	B	251	263	anti-parallel
Strand 12	B	273	285	anti-parallel
Strand 13	B	288	299	anti-parallel
Strand 14	B	329	338	anti-parallel
Strand 15	B	347	361	anti-parallel
Strand 16	B	364	379	anti-parallel
Strand 17	B	389	399	anti-parallel
Strand 18	B	406	418	anti-parallel
Strand 19	B	38	52	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	148	149	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	199	204	anti-parallel

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There are 19 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	52	first strand
Strand 2	C	61	74	anti-parallel
Strand 3	C	82	97	anti-parallel
Strand 4	C	119	131	anti-parallel
Strand 5	C	134	141	anti-parallel
Strand 6	C	159	167	anti-parallel
Strand 7	C	173	184	anti-parallel
Strand 8	C	207	216	anti-parallel
Strand 9	C	221	230	anti-parallel
Strand 10	C	234	246	anti-parallel
Strand 11	C	251	263	anti-parallel
Strand 12	C	273	285	anti-parallel
Strand 13	C	288	298	anti-parallel
Strand 14	C	329	338	anti-parallel
Strand 15	C	347	360	anti-parallel
Strand 16	C	365	379	anti-parallel
Strand 17	C	389	399	anti-parallel
Strand 18	C	406	418	anti-parallel
Strand 19	C	38	52	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	148	149	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	199	204	anti-parallel

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There are 19 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	52	first strand
Strand 2	D	61	74	anti-parallel
Strand 3	D	82	97	anti-parallel
Strand 4	D	119	131	anti-parallel
Strand 5	D	134	141	anti-parallel
Strand 6	D	159	167	anti-parallel
Strand 7	D	173	184	anti-parallel
Strand 8	D	207	215	anti-parallel
Strand 9	D	221	230	anti-parallel
Strand 10	D	234	247	anti-parallel
Strand 11	D	250	263	anti-parallel
Strand 12	D	273	285	anti-parallel
Strand 13	D	288	299	anti-parallel
Strand 14	D	329	338	anti-parallel
Strand 15	D	347	359	anti-parallel
Strand 16	D	367	379	anti-parallel
Strand 17	D	389	399	anti-parallel
Strand 18	D	406	418	anti-parallel
Strand 19	D	38	52	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	148	149	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	203	204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JTY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTY