Analysis of interatomic Contacts of Structural Units in PDB entry:
3JU1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JU1 entry

There are 2 chains in PDB entry 3JU1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13TRP 373
B
 GLN 15GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3JU1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 41Right-handed 310
Helix 2
2
A
45 62Right-handed alpha
Helix 3
3
A
84 95Right-handed alpha
Helix 4
4
A
99 118Right-handed alpha
Helix 5
5
A
133 142Right-handed alpha
Helix 6
6
A
155 161Right-handed 310
Helix 7
7
A
167 172Right-handed alpha
Helix 8
8
A
178 187Right-handed alpha
Helix 9
9
A
191 198Right-handed alpha
Helix 10
10
A
206 208Right-handed 310
Helix 11
11
A
209 219Right-handed alpha
Helix 12
12
A
225 242Right-handed alpha
Helix 13
13
A
251 256Right-handed alpha
Helix 14
14
A
256 264Right-handed alpha
Helix 15
15
A
267 278Right-handed alpha
Helix 16
16
A
282 295Right-handed alpha
Helix 17
17
A
296 309Right-handed alpha
Helix 18
18
A
314 333Right-handed alpha
Helix 19
19
A
334 343Right-handed alpha
Helix 20
20
A
361 370Right-handed alpha
Helix 21
21
B
37 41Right-handed 310
Helix 22
22
B
45 62Right-handed alpha
Helix 23
23
B
84 95Right-handed alpha
Helix 24
24
B
99 118Right-handed alpha
Helix 25
25
B
133 141Right-handed alpha
Helix 26
26
B
156 161Right-handed 310
Helix 27
27
B
167 172Right-handed alpha
Helix 28
28
B
178 187Right-handed alpha
Helix 29
29
B
191 198Right-handed alpha
Helix 30
30
B
206 208Right-handed 310
Helix 31
31
B
209 220Right-handed alpha
Helix 32
32
B
225 244Right-handed alpha
Helix 33
33
B
253 255Right-handed 310
Helix 34
34
B
256 264Right-handed alpha
Helix 35
35
B
267 278Right-handed alpha
Helix 36
36
B
282 295Right-handed alpha
Helix 37
37
B
296 309Right-handed alpha
Helix 38
38
B
314 333Right-handed alpha
Helix 39
39
B
334 343Right-handed alpha
Helix 40
40
B
361 369Right-handed alpha
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There are 4 sheets in PDB entry 3JU1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 23first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
65 72parallel
Strand 4
A
123 126parallel
Strand 5
A
144 147parallel
Strand 6
A
203 204parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
130 132parallel
Strand 3
A
152 154parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
65 72parallel
Strand 4
B
123 127parallel
Strand 5
B
144 147parallel
Strand 6
B
203 204parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
130 132parallel
Strand 3
B
152 154parallel
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