Analysis of interatomic Contacts of Structural Units in PDB entry:
3JU6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JU6 entry

There are 4 chains in PDB entry 3JU6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 370
B	ALA 2	LYS 370
C	ALA 2	LYS 370
D	ALA 2	LYS 370

There are 67 helices in PDB entry 3JU6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	9	Right-handed 310
Helix 2	2	A	10	15	Right-handed alpha
Helix 3	3	A	23	29	Right-handed alpha
Helix 4	4	A	30	38	Right-handed alpha
Helix 5	5	A	47	58	Right-handed alpha
Helix 6	6	A	71	76	Right-handed alpha
Helix 7	7	A	76	88	Right-handed alpha
Helix 8	8	A	102	106	Right-handed 310
Helix 9	9	A	137	153	Right-handed alpha
Helix 10	10	A	170	180	Right-handed alpha
Helix 11	11	A	189	195	Right-handed alpha
Helix 12	12	A	235	259	Right-handed alpha
Helix 13	13	A	274	278	Right-handed 310
Helix 14	14	A	290	296	Right-handed alpha
Helix 15	15	A	298	306	Right-handed alpha
Helix 16	16	A	336	360	Right-handed alpha
Helix 17	17	A	364	368	Right-handed 310
Helix 18	18	B	5	9	Right-handed 310
Helix 19	19	B	10	15	Right-handed alpha
Helix 20	20	B	23	29	Right-handed alpha
Helix 21	21	B	30	38	Right-handed alpha
Helix 22	22	B	47	57	Right-handed alpha
Helix 23	23	B	71	76	Right-handed alpha
Helix 24	24	B	76	88	Right-handed alpha
Helix 25	25	B	102	106	Right-handed 310
Helix 26	26	B	137	154	Right-handed alpha
Helix 27	27	B	156	159	Right-handed 310
Helix 28	28	B	170	180	Right-handed alpha
Helix 29	29	B	189	194	Right-handed alpha
Helix 30	30	B	235	258	Right-handed alpha
Helix 31	31	B	274	278	Right-handed 310
Helix 32	32	B	290	295	Right-handed alpha
Helix 33	33	B	298	306	Right-handed alpha
Helix 34	34	B	336	361	Right-handed alpha
Helix 35	35	C	5	9	Right-handed 310
Helix 36	36	C	10	15	Right-handed alpha
Helix 37	37	C	23	29	Right-handed alpha
Helix 38	38	C	30	38	Right-handed alpha
Helix 39	39	C	47	58	Right-handed alpha
Helix 40	40	C	71	76	Right-handed alpha
Helix 41	41	C	76	88	Right-handed alpha
Helix 42	42	C	102	106	Right-handed 310
Helix 43	43	C	137	153	Right-handed alpha
Helix 44	44	C	156	159	Right-handed 310
Helix 45	45	C	170	180	Right-handed alpha
Helix 46	46	C	189	194	Right-handed alpha
Helix 47	47	C	235	258	Right-handed alpha
Helix 48	48	C	274	278	Right-handed 310
Helix 49	49	C	290	296	Right-handed alpha
Helix 50	50	C	298	306	Right-handed alpha
Helix 51	51	C	336	360	Right-handed alpha
Helix 52	52	D	5	9	Right-handed 310
Helix 53	53	D	10	15	Right-handed alpha
Helix 54	54	D	23	29	Right-handed alpha
Helix 55	55	D	30	38	Right-handed alpha
Helix 56	56	D	47	58	Right-handed alpha
Helix 57	57	D	71	76	Right-handed alpha
Helix 58	58	D	76	88	Right-handed alpha
Helix 59	59	D	102	106	Right-handed 310
Helix 60	60	D	137	154	Right-handed alpha
Helix 61	61	D	156	159	Right-handed 310
Helix 62	62	D	170	180	Right-handed alpha
Helix 63	63	D	189	194	Right-handed alpha
Helix 64	64	D	235	258	Right-handed alpha
Helix 65	65	D	274	278	Right-handed 310
Helix 66	66	D	298	306	Right-handed alpha
Helix 67	67	D	336	360	Right-handed alpha

There are 8 sheets in PDB entry 3JU6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	206	210	anti-parallel
Strand 3	A	215	219	anti-parallel
Strand 4	A	225	232	anti-parallel
Strand 5	A	116	125	anti-parallel
Strand 6	A	283	289	anti-parallel
Strand 7	A	324	329	anti-parallel
Strand 8	A	308	311	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	269	270	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	215	219	anti-parallel
Strand 4	B	225	232	anti-parallel
Strand 5	B	116	125	anti-parallel
Strand 6	B	283	289	anti-parallel
Strand 7	B	324	329	anti-parallel
Strand 8	B	308	312	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	269	270	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	165	first strand
Strand 2	C	206	210	anti-parallel
Strand 3	C	215	219	anti-parallel
Strand 4	C	225	232	anti-parallel
Strand 5	C	116	125	anti-parallel
Strand 6	C	283	289	anti-parallel
Strand 7	C	324	329	anti-parallel
Strand 8	C	308	311	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	265	first strand
Strand 2	C	269	270	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	165	first strand
Strand 2	D	206	210	anti-parallel
Strand 3	D	215	219	anti-parallel
Strand 4	D	225	232	anti-parallel
Strand 5	D	116	125	anti-parallel
Strand 6	D	283	289	anti-parallel
Strand 7	D	324	329	anti-parallel
Strand 8	D	308	311	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	265	first strand
Strand 2	D	269	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JU6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JU6