Analysis of interatomic Contacts of Structural Units in PDB entry:
3JU7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JU7 entry

There are 4 chains in PDB entry 3JU7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2THR 189
A
 PRO 191GLN 369
B
 GLU 2THR 189
B
 PRO 191GLN 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3JU7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 16Right-handed 310
Helix 2
2
A
17 28Right-handed alpha
Helix 3
3
A
34 48Right-handed alpha
Helix 4
4
A
60 73Right-handed alpha
Helix 5
5
A
88 97Right-handed alpha
Helix 6
6
A
114 126Right-handed alpha
Helix 7
7
A
136 140Right-handed 310
Helix 8
8
A
144 153Right-handed alpha
Helix 9
9
A
204 215Right-handed alpha
Helix 10
10
A
235 248Right-handed alpha
Helix 11
11
A
248 270Right-handed alpha
Helix 12
12
A
299 309Right-handed alpha
Helix 13
13
A
321 329Right-handed 310
Helix 14
14
A
336 345Right-handed alpha
Helix 15
15
A
356 368Right-handed alpha
Helix 16
16
B
13 16Right-handed 310
Helix 17
17
B
17 28Right-handed alpha
Helix 18
18
B
34 48Right-handed alpha
Helix 19
19
B
60 73Right-handed alpha
Helix 20
20
B
88 97Right-handed alpha
Helix 21
21
B
114 126Right-handed alpha
Helix 22
22
B
144 154Right-handed alpha
Helix 23
23
B
204 215Right-handed alpha
Helix 24
24
B
235 270Right-handed alpha
Helix 25
25
B
299 310Right-handed alpha
Helix 26
26
B
321 329Right-handed 310
Helix 27
27
B
336 345Right-handed alpha
Helix 28
28
B
356 369Right-handed alpha
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There are 8 sheets in PDB entry 3JU7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
198 202anti-parallel
Strand 3
A
181 185anti-parallel
Strand 4
A
158 160parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
79 83parallel
Strand 3
A
129 132parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
172 173anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
346 349anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
198 202anti-parallel
Strand 3
B
181 185anti-parallel
Strand 4
B
158 160parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
79 83parallel
Strand 3
B
129 132parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
172 173anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
346 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il