Analysis of interatomic Contacts of Structural Units in PDB entry:
3JU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JU8 entry

There are 2 chains in PDB entry 3JU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ILE 486
B
 MSE 2ILE 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3JU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 58Right-handed alpha
Helix 2
2
A
59 77Right-handed alpha
Helix 3
3
A
77 90Right-handed alpha
Helix 4
4
A
92 118Right-handed alpha
Helix 5
5
A
150 164Right-handed alpha
Helix 6
6
A
175 189Right-handed alpha
Helix 7
7
A
202 211Right-handed alpha
Helix 8
8
A
223 234Right-handed alpha
Helix 9
9
A
259 273Right-handed alpha
Helix 10
10
A
274 277Right-handed 310
Helix 11
11
A
290 307Right-handed alpha
Helix 12
12
A
325 342Right-handed alpha
Helix 13
13
A
390 400Right-handed alpha
Helix 14
14
A
413 424Right-handed alpha
Helix 15
15
A
447 451Right-handed 310
Helix 16
16
A
459 464Right-handed alpha
Helix 17
17
B
37 58Right-handed alpha
Helix 18
18
B
59 77Right-handed alpha
Helix 19
19
B
77 90Right-handed alpha
Helix 20
20
B
92 118Right-handed alpha
Helix 21
21
B
150 164Right-handed alpha
Helix 22
22
B
175 189Right-handed alpha
Helix 23
23
B
202 211Right-handed alpha
Helix 24
24
B
223 235Right-handed alpha
Helix 25
25
B
259 272Right-handed alpha
Helix 26
26
B
273 277Right-handed 310
Helix 27
27
B
290 305Right-handed alpha
Helix 28
28
B
325 342Right-handed alpha
Helix 29
29
B
390 400Right-handed alpha
Helix 30
30
B
413 424Right-handed alpha
Helix 31
31
B
447 451Right-handed 310
Helix 32
32
B
459 464Right-handed alpha
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There are 12 sheets in PDB entry 3JU8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
10 12anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
29 34anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
128 136anti-parallel
Strand 3
A
465 472anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
166 170parallel
Strand 3
A
139 143parallel
Strand 4
A
217 221parallel
Strand 5
A
241 245parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
363 366anti-parallel
Strand 3
A
382 388parallel
Strand 4
A
282 288parallel
Strand 5
A
250 254parallel
Strand 6
A
406 410parallel
Strand 7
A
428 431parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
456 457anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
10 12anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
29 34anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
128 136anti-parallel
Strand 3
B
465 472anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
166 170parallel
Strand 3
B
139 143parallel
Strand 4
B
217 221parallel
Strand 5
B
241 245parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 348first strand
Strand 2
B
363 366anti-parallel
Strand 3
B
382 388parallel
Strand 4
B
282 288parallel
Strand 5
B
250 254parallel
Strand 6
B
406 410parallel
Strand 7
B
428 431parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 444first strand
Strand 2
B
456 457anti-parallel
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