Analysis of interatomic Contacts of Structural Units in PDB entry:
3JUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JUA entry

There are 8 chains in PDB entry 3JUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 208LYS 426
B
 GLU 47GLU 85
C
 SER 208LYS 426
D
 THR 48LYS 82
E
 SER 208LYS 426
F
 THR 48PRO 83
G
 SER 208LYS 426
H
 VAL 65PRO 83
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3JUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
261 267Right-handed 310
Helix 2
2
A
273 281Right-handed alpha
Helix 3
3
A
360 372Right-handed alpha
Helix 4
4
A
375 384Right-handed alpha
Helix 5
5
B
50 59Right-handed alpha
Helix 6
6
B
70 74Right-handed 310
Helix 7
7
B
78 82Right-handed 310
Helix 8
8
C
261 267Right-handed 310
Helix 9
9
C
273 281Right-handed alpha
Helix 10
10
C
282 284Right-handed 310
Helix 11
11
C
298 302Right-handed 310
Helix 12
12
C
360 371Right-handed alpha
Helix 13
13
C
375 385Right-handed alpha
Helix 14
14
D
50 55Right-handed alpha
Helix 15
15
D
77 82Right-handed 310
Helix 16
16
E
261 267Right-handed 310
Helix 17
17
E
273 281Right-handed alpha
Helix 18
18
E
282 284Right-handed 310
Helix 19
19
E
360 372Right-handed alpha
Helix 20
20
E
375 384Right-handed alpha
Helix 21
21
F
49 58Right-handed 310
Helix 22
22
F
70 74Right-handed 310
Helix 23
23
F
77 81Right-handed 310
Helix 24
24
G
261 267Right-handed 310
Helix 25
25
G
273 281Right-handed alpha
Helix 26
26
G
282 284Right-handed 310
Helix 27
27
G
360 372Right-handed alpha
Helix 28
28
G
375 383Right-handed alpha
Helix 29
29
H
77 81Right-handed 310
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There are 7 sheets in PDB entry 3JUA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 346first strand
Strand 2
A
349 358anti-parallel
Strand 3
A
305 315anti-parallel
Strand 4
A
218 228anti-parallel
Strand 5
A
233 242anti-parallel
Strand 6
G
233 241anti-parallel
Strand 7
G
218 229anti-parallel
Strand 8
G
308 315anti-parallel
Strand 9
G
350 354anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
418 425parallel
Strand 3
A
286 293anti-parallel
Strand 4
A
400 410parallel
Strand 5
A
386 394anti-parallel
Strand 6
A
320 329anti-parallel
Strand 7
A
332 342anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 242first strand
Strand 2
C
218 229anti-parallel
Strand 3
C
306 315anti-parallel
Strand 4
C
350 354anti-parallel
Strand 5
C
344 345anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 259first strand
Strand 2
C
418 425parallel
Strand 3
C
286 293anti-parallel
Strand 4
C
400 410parallel
Strand 5
C
386 394anti-parallel
Strand 6
C
320 329anti-parallel
Strand 7
C
332 342anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
234 240first strand
Strand 2
E
218 228anti-parallel
Strand 3
E
306 315anti-parallel
Strand 4
E
349 358anti-parallel
Strand 5
E
344 346anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
256 259first strand
Strand 2
E
418 425parallel
Strand 3
E
286 293anti-parallel
Strand 4
E
400 410parallel
Strand 5
E
387 394anti-parallel
Strand 6
E
321 328anti-parallel
Strand 7
E
333 341anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
257 259first strand
Strand 2
G
418 425parallel
Strand 3
G
286 293anti-parallel
Strand 4
G
400 410parallel
Strand 5
G
387 394anti-parallel
Strand 6
G
320 326anti-parallel
Strand 7
G
339 342anti-parallel
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