Analysis of interatomic Contacts of Structural Units in PDB entry:
3JUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JUJ entry

There are 4 chains in PDB entry 3JUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 273
B
 MET 1LEU 273
C
 MET 1LEU 273
D
 MET 1LEU 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3JUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
24 28Right-handed 310
Helix 4
4
A
34 45Right-handed alpha
Helix 5
5
A
59 66Right-handed alpha
Helix 6
6
A
69 77Right-handed alpha
Helix 7
7
A
85 95Right-handed alpha
Helix 8
8
A
106 115Right-handed alpha
Helix 9
9
A
115 120Right-handed alpha
Helix 10
10
A
140 153Right-handed alpha
Helix 11
11
A
165 169Right-handed 310
Helix 12
12
A
211 220Right-handed alpha
Helix 13
13
A
229 241Right-handed alpha
Helix 14
14
A
257 272Right-handed alpha
Helix 15
15
B
13 17Right-handed 310
Helix 16
16
B
18 22Right-handed 310
Helix 17
17
B
24 28Right-handed 310
Helix 18
18
B
34 46Right-handed alpha
Helix 19
19
B
59 66Right-handed alpha
Helix 20
20
B
69 75Right-handed alpha
Helix 21
21
B
85 95Right-handed alpha
Helix 22
22
B
107 120Right-handed alpha
Helix 23
23
B
140 153Right-handed alpha
Helix 24
24
B
164 169Right-handed 310
Helix 25
25
B
193 197Right-handed 310
Helix 26
26
B
211 220Right-handed alpha
Helix 27
27
B
229 241Right-handed alpha
Helix 28
28
B
257 271Right-handed alpha
Helix 29
29
C
13 17Right-handed 310
Helix 30
30
C
18 22Right-handed 310
Helix 31
31
C
24 28Right-handed 310
Helix 32
32
C
34 46Right-handed alpha
Helix 33
33
C
58 66Right-handed alpha
Helix 34
34
C
85 95Right-handed alpha
Helix 35
35
C
106 115Right-handed alpha
Helix 36
36
C
115 120Right-handed alpha
Helix 37
37
C
140 153Right-handed alpha
Helix 38
38
C
165 169Right-handed 310
Helix 39
39
C
211 220Right-handed alpha
Helix 40
40
C
223 227Right-handed 310
Helix 41
41
C
229 241Right-handed alpha
Helix 42
42
C
257 271Right-handed alpha
Helix 43
43
D
13 17Right-handed 310
Helix 44
44
D
18 22Right-handed 310
Helix 45
45
D
24 28Right-handed 310
Helix 46
46
D
34 46Right-handed alpha
Helix 47
47
D
59 66Right-handed alpha
Helix 48
48
D
69 75Right-handed alpha
Helix 49
49
D
82 84Right-handed 310
Helix 50
50
D
85 95Right-handed alpha
Helix 51
51
D
106 115Right-handed alpha
Helix 52
52
D
115 120Right-handed alpha
Helix 53
53
D
140 153Right-handed alpha
Helix 54
54
D
165 169Right-handed 310
Helix 55
55
D
211 220Right-handed alpha
Helix 56
56
D
223 227Right-handed 310
Helix 57
57
D
229 241Right-handed alpha
Helix 58
58
D
257 272Right-handed alpha
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There are 8 sheets in PDB entry 3JUJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 20 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 209first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
244 247parallel
Strand 4
A
182 190anti-parallel
Strand 5
A
171 179anti-parallel
Strand 6
A
201 209anti-parallel
Strand 7
A
124 127anti-parallel
Strand 8
A
4 9parallel
Strand 9
A
50 55parallel
Strand 10
A
96 101parallel
Strand 11
D
96 101anti-parallel
Strand 12
D
50 55parallel
Strand 13
D
4 8parallel
Strand 14
D
124 127parallel
Strand 15
D
201 209anti-parallel
Strand 16
D
171 179anti-parallel
Strand 17
D
182 190anti-parallel
Strand 18
D
244 247anti-parallel
Strand 19
D
156 161parallel
Strand 20
D
201 209anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
251 254anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
124 127anti-parallel
Strand 3
B
4 8parallel
Strand 4
B
50 54parallel
Strand 5
B
96 99parallel
Strand 6
C
96 101anti-parallel
Strand 7
C
50 55parallel
Strand 8
C
4 8parallel
Strand 9
C
124 127parallel
Strand 10
C
206 209anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
251 254anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 161first strand
Strand 2
B
201 203anti-parallel
Strand 3
B
171 179anti-parallel
Strand 4
B
182 190anti-parallel
Strand 5
B
243 247anti-parallel
Strand 6
B
155 161parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 134first strand
Strand 2
C
251 254anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 161first strand
Strand 2
C
201 203anti-parallel
Strand 3
C
171 179anti-parallel
Strand 4
C
182 190anti-parallel
Strand 5
C
244 247anti-parallel
Strand 6
C
156 161parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 134first strand
Strand 2
D
251 254anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il