Analysis of interatomic Contacts of Structural Units in PDB entry:
3JUR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JUR entry

There are 4 chains in PDB entry 3JUR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	LYS 448
B	GLU 5	LYS 448
C	GLU 5	LYS 448
D	MET 3	LYS 448

There are 40 helices in PDB entry 3JUR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	18	Right-handed alpha
Helix 2	2	A	31	34	Right-handed 310
Helix 3	3	A	43	58	Right-handed alpha
Helix 4	4	A	93	98	Right-handed 310
Helix 5	5	A	142	147	Right-handed 310
Helix 6	6	A	148	152	Right-handed 310
Helix 7	7	A	160	174	Right-handed alpha
Helix 8	8	A	176	180	Right-handed 310
Helix 9	9	A	269	277	Right-handed alpha
Helix 10	10	A	361	365	Right-handed 310
Helix 11	11	B	5	17	Right-handed alpha
Helix 12	12	B	31	34	Right-handed 310
Helix 13	13	B	43	57	Right-handed alpha
Helix 14	14	B	93	98	Right-handed 310
Helix 15	15	B	142	147	Right-handed 310
Helix 16	16	B	148	152	Right-handed 310
Helix 17	17	B	160	174	Right-handed alpha
Helix 18	18	B	176	180	Right-handed 310
Helix 19	19	B	269	277	Right-handed alpha
Helix 20	20	B	361	365	Right-handed 310
Helix 21	21	C	5	18	Right-handed alpha
Helix 22	22	C	31	34	Right-handed 310
Helix 23	23	C	43	57	Right-handed alpha
Helix 24	24	C	93	98	Right-handed 310
Helix 25	25	C	142	147	Right-handed 310
Helix 26	26	C	148	152	Right-handed 310
Helix 27	27	C	160	173	Right-handed alpha
Helix 28	28	C	176	180	Right-handed 310
Helix 29	29	C	269	277	Right-handed alpha
Helix 30	30	C	361	365	Right-handed 310
Helix 31	31	D	5	17	Right-handed alpha
Helix 32	32	D	31	34	Right-handed 310
Helix 33	33	D	43	58	Right-handed alpha
Helix 34	34	D	93	98	Right-handed 310
Helix 35	35	D	142	147	Right-handed 310
Helix 36	36	D	148	152	Right-handed 310
Helix 37	37	D	160	174	Right-handed alpha
Helix 38	38	D	176	180	Right-handed 310
Helix 39	39	D	269	277	Right-handed alpha
Helix 40	40	D	361	365	Right-handed 310

There are 22 sheets in PDB entry 3JUR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 28 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	60	64	parallel
Strand 3	A	80	84	parallel
Strand 4	A	123	128	parallel
Strand 5	A	199	204	parallel
Strand 6	A	222	227	parallel
Strand 7	A	247	252	parallel
Strand 8	A	280	286	parallel
Strand 9	A	309	315	parallel
Strand 10	A	337	344	parallel
Strand 11	A	372	379	parallel
Strand 12	A	400	411	parallel
Strand 13	A	415	431	parallel
Strand 14	A	434	448	anti-parallel
Strand 15	B	434	447	anti-parallel
Strand 16	B	415	431	anti-parallel
Strand 17	B	400	411	parallel
Strand 18	B	372	379	parallel
Strand 19	B	337	344	parallel
Strand 20	B	309	315	parallel
Strand 21	B	280	286	parallel
Strand 22	B	247	252	parallel
Strand 23	B	222	227	parallel
Strand 24	B	199	204	parallel
Strand 25	B	123	128	parallel
Strand 26	B	80	84	parallel
Strand 27	B	60	64	parallel
Strand 28	B	27	29	parallel

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There are 23 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	60	64	parallel
Strand 3	A	80	84	parallel
Strand 4	A	123	128	parallel
Strand 5	A	199	204	parallel
Strand 6	A	222	227	parallel
Strand 7	A	247	252	parallel
Strand 8	A	280	286	parallel
Strand 9	A	309	315	parallel
Strand 10	A	337	344	parallel
Strand 11	A	372	379	parallel
Strand 12	A	400	411	parallel
Strand 13	A	382	385	parallel
Strand 14	A	347	351	parallel
Strand 15	A	318	320	parallel
Strand 16	A	289	291	parallel
Strand 17	A	255	258	parallel
Strand 18	A	230	233	parallel
Strand 19	A	207	209	parallel
Strand 20	A	132	134	parallel
Strand 21	A	87	90	parallel
Strand 22	A	68	71	parallel
Strand 23	A	38	42	parallel

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There are 18 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	68	71	parallel
Strand 3	A	87	90	parallel
Strand 4	A	132	134	parallel
Strand 5	A	207	209	parallel
Strand 6	A	230	233	parallel
Strand 7	A	255	258	parallel
Strand 8	A	289	291	parallel
Strand 9	A	318	320	parallel
Strand 10	A	347	351	parallel
Strand 11	A	382	385	parallel
Strand 12	A	400	411	parallel
Strand 13	A	415	431	parallel
Strand 14	A	388	393	parallel
Strand 15	A	354	359	parallel
Strand 16	A	324	329	parallel
Strand 17	A	297	301	parallel
Strand 18	A	261	265	parallel

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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	297	301	parallel
Strand 3	A	324	329	parallel
Strand 4	A	354	359	parallel
Strand 5	A	388	393	parallel
Strand 6	A	415	431	parallel
Strand 7	A	434	448	anti-parallel
Strand 8	B	434	447	anti-parallel
Strand 9	B	415	431	anti-parallel
Strand 10	B	388	393	parallel
Strand 11	B	354	359	parallel
Strand 12	B	324	329	parallel
Strand 13	B	297	301	parallel
Strand 14	B	261	265	parallel

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There are 18 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	265	first strand
Strand 2	B	297	301	parallel
Strand 3	B	324	329	parallel
Strand 4	B	354	359	parallel
Strand 5	B	388	393	parallel
Strand 6	B	415	431	parallel
Strand 7	B	400	411	parallel
Strand 8	B	382	384	parallel
Strand 9	B	347	349	parallel
Strand 10	B	318	320	parallel
Strand 11	B	289	291	parallel
Strand 12	B	255	258	parallel
Strand 13	B	230	233	parallel
Strand 14	B	207	209	parallel
Strand 15	B	132	134	parallel
Strand 16	B	87	90	parallel
Strand 17	B	68	71	parallel
Strand 18	B	38	42	parallel

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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	68	71	parallel
Strand 3	B	87	90	parallel
Strand 4	B	132	134	parallel
Strand 5	B	207	209	parallel
Strand 6	B	230	233	parallel
Strand 7	B	255	258	parallel
Strand 8	B	289	291	parallel
Strand 9	B	318	320	parallel
Strand 10	B	347	349	parallel
Strand 11	B	382	384	parallel
Strand 12	B	318	320	first strand

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There are 14 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	382	384	first strand
Strand 3	B	400	411	parallel
Strand 4	B	372	379	parallel
Strand 5	B	337	344	parallel
Strand 6	B	309	315	parallel
Strand 7	B	280	286	parallel
Strand 8	B	247	252	parallel
Strand 9	B	222	227	parallel
Strand 10	B	199	204	parallel
Strand 11	B	123	128	parallel
Strand 12	B	80	84	parallel
Strand 13	B	60	64	parallel
Strand 14	B	27	29	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	117	120	parallel
Strand 3	A	193	196	parallel
Strand 4	A	216	219	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	105	first strand
Strand 2	A	108	112	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	117	120	parallel
Strand 3	B	193	196	parallel
Strand 4	B	216	219	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	105	first strand
Strand 2	B	108	112	anti-parallel

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There are 28 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	60	64	parallel
Strand 3	C	80	84	parallel
Strand 4	C	123	128	parallel
Strand 5	C	199	204	parallel
Strand 6	C	222	227	parallel
Strand 7	C	247	252	parallel
Strand 8	C	280	286	parallel
Strand 9	C	309	315	parallel
Strand 10	C	337	344	parallel
Strand 11	C	372	379	parallel
Strand 12	C	400	411	parallel
Strand 13	C	415	431	parallel
Strand 14	C	434	447	anti-parallel
Strand 15	D	434	447	anti-parallel
Strand 16	D	415	431	anti-parallel
Strand 17	D	400	411	parallel
Strand 18	D	372	379	parallel
Strand 19	D	337	344	parallel
Strand 20	D	309	315	parallel
Strand 21	D	280	286	parallel
Strand 22	D	247	252	parallel
Strand 23	D	222	227	parallel
Strand 24	D	199	204	parallel
Strand 25	D	123	128	parallel
Strand 26	D	80	84	parallel
Strand 27	D	60	64	parallel
Strand 28	D	27	29	parallel

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There are 23 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	60	64	parallel
Strand 3	C	80	84	parallel
Strand 4	C	123	128	parallel
Strand 5	C	199	204	parallel
Strand 6	C	222	227	parallel
Strand 7	C	247	252	parallel
Strand 8	C	280	286	parallel
Strand 9	C	309	315	parallel
Strand 10	C	337	344	parallel
Strand 11	C	372	379	parallel
Strand 12	C	400	411	parallel
Strand 13	C	382	384	parallel
Strand 14	C	347	349	parallel
Strand 15	C	318	320	parallel
Strand 16	C	289	291	parallel
Strand 17	C	255	258	parallel
Strand 18	C	230	233	parallel
Strand 19	C	207	209	parallel
Strand 20	C	132	134	parallel
Strand 21	C	87	90	parallel
Strand 22	C	68	71	parallel
Strand 23	C	38	42	parallel

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There are 18 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	C	68	71	parallel
Strand 3	C	87	90	parallel
Strand 4	C	132	134	parallel
Strand 5	C	207	209	parallel
Strand 6	C	230	233	parallel
Strand 7	C	255	258	parallel
Strand 8	C	289	291	parallel
Strand 9	C	318	320	parallel
Strand 10	C	347	349	parallel
Strand 11	C	382	384	parallel
Strand 12	C	400	411	parallel
Strand 13	C	415	431	parallel
Strand 14	C	388	393	parallel
Strand 15	C	354	359	parallel
Strand 16	C	324	329	parallel
Strand 17	C	299	301	parallel
Strand 18	C	263	265	parallel

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There are 14 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	265	first strand
Strand 2	C	299	301	parallel
Strand 3	C	324	329	parallel
Strand 4	C	354	359	parallel
Strand 5	C	388	393	parallel
Strand 6	C	415	431	parallel
Strand 7	C	434	447	anti-parallel
Strand 8	D	434	447	anti-parallel
Strand 9	D	415	431	anti-parallel
Strand 10	D	388	393	parallel
Strand 11	D	354	359	parallel
Strand 12	D	324	329	parallel
Strand 13	D	299	301	parallel
Strand 14	D	263	265	parallel

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There are 18 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	299	301	parallel
Strand 3	D	324	329	parallel
Strand 4	D	354	359	parallel
Strand 5	D	388	393	parallel
Strand 6	D	415	431	parallel
Strand 7	D	400	411	parallel
Strand 8	D	382	384	parallel
Strand 9	D	347	349	parallel
Strand 10	D	318	320	parallel
Strand 11	D	289	291	parallel
Strand 12	D	255	258	parallel
Strand 13	D	230	233	parallel
Strand 14	D	207	209	parallel
Strand 15	D	132	134	parallel
Strand 16	D	87	90	parallel
Strand 17	D	68	71	parallel
Strand 18	D	38	42	parallel

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There are 12 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	42	first strand
Strand 2	D	68	71	parallel
Strand 3	D	87	90	parallel
Strand 4	D	132	134	parallel
Strand 5	D	207	209	parallel
Strand 6	D	230	233	parallel
Strand 7	D	255	258	parallel
Strand 8	D	289	291	parallel
Strand 9	D	318	320	parallel
Strand 10	D	347	349	parallel
Strand 11	D	382	384	parallel
Strand 12	D	318	320	first strand

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There are 14 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	382	384	first strand
Strand 3	D	400	411	parallel
Strand 4	D	372	379	parallel
Strand 5	D	337	344	parallel
Strand 6	D	309	315	parallel
Strand 7	D	280	286	parallel
Strand 8	D	247	252	parallel
Strand 9	D	222	227	parallel
Strand 10	D	199	204	parallel
Strand 11	D	123	128	parallel
Strand 12	D	80	84	parallel
Strand 13	D	60	64	parallel
Strand 14	D	27	29	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	117	120	parallel
Strand 3	C	193	196	parallel
Strand 4	C	216	219	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	105	first strand
Strand 2	C	108	112	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	117	120	parallel
Strand 3	D	193	196	parallel
Strand 4	D	216	219	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	105	first strand
Strand 2	D	108	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JUR

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JUR