Analysis of interatomic Contacts of Structural Units in PDB entry:
3JUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JUV entry

There is 1 chain in PDB entry 3JUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 55SER 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3JUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 80Right-handed alpha
Helix 2
2
A
80 93Right-handed alpha
Helix 3
3
A
110 120Right-handed alpha
Helix 4
4
A
127 131Right-handed 310
Helix 5
5
A
143 147Right-handed 310
Helix 6
6
A
148 163Right-handed alpha
Helix 7
7
A
164 185Right-handed alpha
Helix 8
8
A
194 212Right-handed alpha
Helix 9
9
A
212 219Right-handed alpha
Helix 10
10
A
220 231Right-handed alpha
Helix 11
11
A
233 238Right-handed 310
Helix 12
12
A
250 273Right-handed alpha
Helix 13
13
A
280 288Right-handed alpha
Helix 14
14
A
297 330Right-handed alpha
Helix 15
15
A
330 346Right-handed alpha
Helix 16
16
A
353 358Right-handed alpha
Helix 17
17
A
360 374Right-handed alpha
Helix 18
18
A
404 409Right-handed alpha
Helix 19
19
A
422 427Right-handed 310
Helix 20
20
A
430 435Right-handed alpha
Helix 21
21
A
451 469Right-handed alpha
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There are 5 sheets in PDB entry 3JUV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
95 100parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
400 403parallel
Strand 5
A
380 384anti-parallel
Strand 6
A
125 126anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
495 500anti-parallel
Strand 3
A
470 473anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
394 395anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
447 448anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 483first strand
Strand 2
A
490 491anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il