Analysis of interatomic Contacts of Structural Units in PDB entry:
3JUW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JUW entry

There are 3 chains in PDB entry 3JUW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ALA 171
B
 ARG 5ALA 171
C
 ARG 5ALA 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3JUW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
22 33Right-handed alpha
Helix 3
3
A
42 61Right-handed alpha
Helix 4
4
A
104 107Right-handed 310
Helix 5
5
A
110 128Right-handed alpha
Helix 6
6
A
140 150Right-handed alpha
Helix 7
7
B
19 21Right-handed 310
Helix 8
8
B
22 32Right-handed alpha
Helix 9
9
B
42 61Right-handed alpha
Helix 10
10
B
104 107Right-handed 310
Helix 11
11
B
110 127Right-handed alpha
Helix 12
12
B
140 150Right-handed alpha
Helix 13
13
C
19 21Right-handed 310
Helix 14
14
C
22 32Right-handed alpha
Helix 15
15
C
42 61Right-handed alpha
Helix 16
16
C
104 107Right-handed 310
Helix 17
17
C
110 126Right-handed alpha
Helix 18
18
C
140 150Right-handed alpha
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There are 6 sheets in PDB entry 3JUW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
75 82anti-parallel
Strand 5
A
97 102anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
163 170anti-parallel
Strand 3
A
153 160anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
14 17anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
75 82anti-parallel
Strand 5
B
97 102anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 137first strand
Strand 2
B
164 170anti-parallel
Strand 3
B
153 159anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
14 17anti-parallel
Strand 3
C
64 68anti-parallel
Strand 4
C
75 82anti-parallel
Strand 5
C
97 102anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 137first strand
Strand 2
C
163 170anti-parallel
Strand 3
C
153 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il