Analysis of interatomic Contacts of Structural Units in PDB entry:
3JV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JV2 entry

There are 2 chains in PDB entry 3JV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 15GLU 779
B
 ARG 14ARG 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 3JV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
30 35Right-handed alpha
Helix 3
3
A
37 54Right-handed alpha
Helix 4
4
A
57 77Right-handed alpha
Helix 5
5
A
82 94Right-handed alpha
Helix 6
6
A
105 117Right-handed alpha
Helix 7
7
A
130 148Right-handed alpha
Helix 8
8
A
160 170Right-handed alpha
Helix 9
9
A
177 188Right-handed alpha
Helix 10
10
A
192 196Right-handed 310
Helix 11
11
A
208 214Right-handed alpha
Helix 12
12
A
231 244Right-handed alpha
Helix 13
13
A
262 273Right-handed alpha
Helix 14
14
A
280 282Right-handed 310
Helix 15
15
A
283 299Right-handed alpha
Helix 16
16
A
332 341Right-handed alpha
Helix 17
17
A
357 362Right-handed alpha
Helix 18
18
A
374 376Right-handed 310
Helix 19
19
A
377 386Right-handed alpha
Helix 20
20
A
410 428Right-handed alpha
Helix 21
21
A
438 453Right-handed alpha
Helix 22
22
A
463 473Right-handed alpha
Helix 23
23
A
499 503Right-handed 310
Helix 24
24
A
515 524Right-handed alpha
Helix 25
25
A
525 526Right-handed 310
Helix 26
26
A
527 531Right-handed 310
Helix 27
27
A
548 562Right-handed alpha
Helix 28
28
A
571 619Right-handed alpha
Helix 29
29
A
623 641Right-handed alpha
Helix 30
30
A
656 665Right-handed alpha
Helix 31
31
A
672 676Right-handed 310
Helix 32
32
A
680 702Right-handed alpha
Helix 33
33
A
705 737Right-handed alpha
Helix 34
34
A
738 741Right-handed 310
Helix 35
35
A
748 778Right-handed alpha
Helix 36
36
B
17 29Right-handed alpha
Helix 37
37
B
30 33Right-handed 310
Helix 38
38
B
37 55Right-handed alpha
Helix 39
39
B
57 78Right-handed alpha
Helix 40
40
B
82 94Right-handed alpha
Helix 41
41
B
105 117Right-handed alpha
Helix 42
42
B
130 148Right-handed alpha
Helix 43
43
B
160 170Right-handed alpha
Helix 44
44
B
177 188Right-handed alpha
Helix 45
45
B
192 196Right-handed 310
Helix 46
46
B
208 214Right-handed alpha
Helix 47
47
B
231 244Right-handed alpha
Helix 48
48
B
262 274Right-handed alpha
Helix 49
49
B
280 282Right-handed 310
Helix 50
50
B
283 299Right-handed alpha
Helix 51
51
B
332 341Right-handed alpha
Helix 52
52
B
357 362Right-handed alpha
Helix 53
53
B
374 376Right-handed 310
Helix 54
54
B
377 386Right-handed alpha
Helix 55
55
B
410 429Right-handed alpha
Helix 56
56
B
438 453Right-handed alpha
Helix 57
57
B
463 473Right-handed alpha
Helix 58
58
B
499 503Right-handed 310
Helix 59
59
B
515 524Right-handed alpha
Helix 60
60
B
525 526Right-handed 310
Helix 61
61
B
527 531Right-handed 310
Helix 62
62
B
543 549Right-handed alpha
Helix 63
63
B
551 562Right-handed alpha
Helix 64
64
B
571 620Right-handed alpha
Helix 65
65
B
623 641Right-handed alpha
Helix 66
66
B
656 665Right-handed alpha
Helix 67
67
B
680 702Right-handed alpha
Helix 68
68
B
705 737Right-handed alpha
Helix 69
69
B
738 741Right-handed 310
Helix 70
70
B
748 778Right-handed alpha
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There are 12 sheets in PDB entry 3JV2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
172 176parallel
Strand 3
A
125 128parallel
Strand 4
A
203 207parallel
Strand 5
A
366 371parallel
Strand 6
A
95 99parallel
Strand 7
A
388 391parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 356first strand
Strand 2
A
220 224anti-parallel
Strand 3
C
1 3parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
258 261anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
312 315anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
533 540parallel
Strand 3
A
406 408parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 406first strand
Strand 2
A
533 540parallel
Strand 3
A
505 509parallel
Strand 4
A
432 436parallel
Strand 5
A
480 484parallel
Strand 6
A
457 459parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
172 176parallel
Strand 3
B
125 128parallel
Strand 4
B
203 206parallel
Strand 5
B
366 371parallel
Strand 6
B
95 99parallel
Strand 7
B
388 391parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 356first strand
Strand 2
B
220 224anti-parallel
Strand 3
D
1 3parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 253first strand
Strand 2
B
258 261anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
313 315anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 402first strand
Strand 2
B
533 540parallel
Strand 3
B
406 408parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 406first strand
Strand 2
B
533 540parallel
Strand 3
B
505 509parallel
Strand 4
B
432 436parallel
Strand 5
B
480 484parallel
Strand 6
B
457 459parallel
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