Analysis of interatomic Contacts of Structural Units in PDB entry:
3JV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JV3 entry

There are 2 chains in PDB entry 3JV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LEU 1426
B
 LEU 1204GLU 1427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3JV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1206 1208Right-handed 310
Helix 2
2
A
1209 1215Right-handed alpha
Helix 3
3
A
1220 1224Right-handed 310
Helix 4
4
A
1225 1256Right-handed alpha
Helix 5
5
A
1257 1262Right-handed alpha
Helix 6
6
A
1267 1276Right-handed alpha
Helix 7
7
A
1277 1300Right-handed alpha
Helix 8
8
A
1308 1316Right-handed alpha
Helix 9
9
A
1317 1319Right-handed 310
Helix 10
10
A
1320 1343Right-handed alpha
Helix 11
11
A
1343 1354Right-handed alpha
Helix 12
12
A
1355 1360Right-handed 310
Helix 13
13
A
1363 1368Right-handed alpha
Helix 14
14
A
1369 1387Right-handed alpha
Helix 15
15
A
1395 1423Right-handed alpha
Helix 16
16
A
1424 1426Right-handed 310
Helix 17
17
B
1209 1215Right-handed alpha
Helix 18
18
B
1220 1224Right-handed 310
Helix 19
19
B
1225 1255Right-handed alpha
Helix 20
20
B
1256 1264Right-handed alpha
Helix 21
21
B
1267 1276Right-handed alpha
Helix 22
22
B
1277 1300Right-handed alpha
Helix 23
23
B
1308 1316Right-handed alpha
Helix 24
24
B
1317 1319Right-handed 310
Helix 25
25
B
1320 1343Right-handed alpha
Helix 26
26
B
1343 1355Right-handed alpha
Helix 27
27
B
1356 1360Right-handed 310
Helix 28
28
B
1363 1368Right-handed alpha
Helix 29
29
B
1369 1388Right-handed alpha
Helix 30
30
B
1395 1424Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3JV3.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1193 1198first strand
Strand 2
A
1185 1190anti-parallel
Strand 3
A
1174 1179anti-parallel
Strand 4
A
1151 1155anti-parallel
Strand 5
A
1202 1204anti-parallel
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