Analysis of interatomic Contacts of Structural Units in PDB entry:
3JV4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JV4 entry

There are 6 chains in PDB entry 3JV4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 278	ARG 378
B	ALA 245	ARG 359
C	THR 278	ARG 378
D	ALA 245	ARG 359
E	THR 278	ARG 378
F	ALA 245	GLU 356

There are 6 helices in PDB entry 3JV4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	327	329	Right-handed 310
Helix 2	2	B	303	306	Right-handed 310
Helix 3	3	C	327	329	Right-handed 310
Helix 4	4	D	299	306	Right-handed 310
Helix 5	5	E	327	329	Right-handed 310
Helix 6	6	F	299	306	Right-handed 310

There are 16 sheets in PDB entry 3JV4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	301	303	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	371	376	parallel
Strand 3	A	353	358	anti-parallel
Strand 4	A	314	316	anti-parallel
Strand 5	A	321	323	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	339	340	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	336	337	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	265	270	anti-parallel
Strand 3	B	308	312	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	259	first strand
Strand 2	B	343	348	parallel
Strand 3	B	325	333	anti-parallel
Strand 4	B	278	284	anti-parallel
Strand 5	B	292	295	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	286	first strand
Strand 2	C	298	303	anti-parallel
Strand 3	C	336	340	anti-parallel
Strand 4	C	331	332	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	292	first strand
Strand 2	C	371	376	parallel
Strand 3	C	353	358	anti-parallel
Strand 4	C	314	316	anti-parallel
Strand 5	C	321	323	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	253	first strand
Strand 2	D	265	270	anti-parallel
Strand 3	D	308	312	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	259	first strand
Strand 2	D	343	348	parallel
Strand 3	D	325	332	anti-parallel
Strand 4	D	279	285	anti-parallel
Strand 5	D	291	295	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	301	303	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	292	first strand
Strand 2	E	371	376	parallel
Strand 3	E	353	358	anti-parallel
Strand 4	E	314	316	anti-parallel
Strand 5	E	321	323	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	299	first strand
Strand 2	E	339	340	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	332	first strand
Strand 2	E	336	337	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	253	first strand
Strand 2	F	265	270	anti-parallel
Strand 3	F	308	312	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	259	first strand
Strand 2	F	343	348	parallel
Strand 3	F	325	333	anti-parallel
Strand 4	F	278	284	anti-parallel
Strand 5	F	292	295	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JV4

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JV4