Analysis of interatomic Contacts of Structural Units in PDB entry:
3JV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JV6 entry

There are 6 chains in PDB entry 3JV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 278	ARG 378
B	ALA 225	ASP 331
C	THR 278	ARG 378
D	ALA 225	GLU 330
E	THR 278	ARG 378
F	ALA 225	VAL 329

There are 5 helices in PDB entry 3JV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	327	334	Right-handed 310
Helix 2	2	B	277	279	Right-handed 310
Helix 3	3	C	327	334	Right-handed 310
Helix 4	4	E	327	334	Right-handed 310
Helix 5	5	F	277	279	Right-handed 310

There are 12 sheets in PDB entry 3JV6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	298	303	anti-parallel
Strand 3	A	336	340	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	371	376	parallel
Strand 3	A	353	360	anti-parallel
Strand 4	A	312	316	anti-parallel
Strand 5	A	321	323	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	286	290	anti-parallel
Strand 4	B	281	282	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	321	326	parallel
Strand 3	B	303	311	anti-parallel
Strand 4	B	258	263	anti-parallel
Strand 5	B	271	273	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	286	first strand
Strand 2	C	298	303	anti-parallel
Strand 3	C	336	340	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	292	first strand
Strand 2	C	371	376	parallel
Strand 3	C	353	360	anti-parallel
Strand 4	C	312	316	anti-parallel
Strand 5	C	321	323	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	233	first strand
Strand 2	D	245	250	anti-parallel
Strand 3	D	286	290	anti-parallel
Strand 4	D	281	282	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	321	326	parallel
Strand 3	D	303	311	anti-parallel
Strand 4	D	258	263	anti-parallel
Strand 5	D	271	273	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	298	303	anti-parallel
Strand 3	E	336	340	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	292	first strand
Strand 2	E	371	376	parallel
Strand 3	E	353	360	anti-parallel
Strand 4	E	312	316	anti-parallel
Strand 5	E	321	323	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	233	first strand
Strand 2	F	245	250	anti-parallel
Strand 3	F	286	290	anti-parallel
Strand 4	F	281	282	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	239	first strand
Strand 2	F	321	326	parallel
Strand 3	F	303	311	anti-parallel
Strand 4	F	258	263	anti-parallel
Strand 5	F	271	273	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JV6