Analysis of interatomic Contacts of Structural Units in PDB entry:
3JV7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JV7 entry

There are 4 chains in PDB entry 3JV7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 345
B	MET 1	PRO 345
C	MET 1	PRO 345
D	MET 1	PRO 345

There are 64 helices in PDB entry 3JV7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	38	47	Right-handed alpha
Helix 2	2	A	95	100	Right-handed alpha
Helix 3	3	A	101	106	Right-handed 310
Helix 4	4	A	108	113	Right-handed alpha
Helix 5	5	A	133	135	Right-handed 310
Helix 6	6	A	144	149	Right-handed alpha
Helix 7	7	A	150	153	Right-handed 310
Helix 8	8	A	155	164	Right-handed alpha
Helix 9	9	A	165	169	Right-handed 310
Helix 10	10	A	181	195	Right-handed alpha
Helix 11	11	A	205	215	Right-handed alpha
Helix 12	12	A	226	236	Right-handed alpha
Helix 13	13	A	237	239	Right-handed 310
Helix 14	14	A	249	259	Right-handed alpha
Helix 15	15	A	297	310	Right-handed alpha
Helix 16	16	A	324	335	Right-handed alpha
Helix 17	17	B	38	47	Right-handed alpha
Helix 18	18	B	95	100	Right-handed alpha
Helix 19	19	B	101	106	Right-handed 310
Helix 20	20	B	108	113	Right-handed alpha
Helix 21	21	B	133	135	Right-handed 310
Helix 22	22	B	144	149	Right-handed alpha
Helix 23	23	B	150	153	Right-handed 310
Helix 24	24	B	155	165	Right-handed alpha
Helix 25	25	B	166	169	Right-handed 310
Helix 26	26	B	181	195	Right-handed alpha
Helix 27	27	B	205	215	Right-handed alpha
Helix 28	28	B	226	236	Right-handed alpha
Helix 29	29	B	237	239	Right-handed 310
Helix 30	30	B	249	259	Right-handed alpha
Helix 31	31	B	297	310	Right-handed alpha
Helix 32	32	B	324	335	Right-handed alpha
Helix 33	33	C	38	47	Right-handed alpha
Helix 34	34	C	95	100	Right-handed alpha
Helix 35	35	C	101	106	Right-handed 310
Helix 36	36	C	108	113	Right-handed alpha
Helix 37	37	C	133	135	Right-handed 310
Helix 38	38	C	144	149	Right-handed alpha
Helix 39	39	C	150	153	Right-handed 310
Helix 40	40	C	155	164	Right-handed alpha
Helix 41	41	C	165	169	Right-handed 310
Helix 42	42	C	181	195	Right-handed alpha
Helix 43	43	C	205	215	Right-handed alpha
Helix 44	44	C	226	236	Right-handed alpha
Helix 45	45	C	249	259	Right-handed alpha
Helix 46	46	C	297	310	Right-handed alpha
Helix 47	47	C	321	323	Right-handed 310
Helix 48	48	C	324	335	Right-handed alpha
Helix 49	49	D	38	46	Right-handed alpha
Helix 50	50	D	95	100	Right-handed alpha
Helix 51	51	D	101	106	Right-handed 310
Helix 52	52	D	108	113	Right-handed alpha
Helix 53	53	D	133	135	Right-handed 310
Helix 54	54	D	144	149	Right-handed alpha
Helix 55	55	D	150	153	Right-handed 310
Helix 56	56	D	155	164	Right-handed alpha
Helix 57	57	D	165	169	Right-handed 310
Helix 58	58	D	181	195	Right-handed alpha
Helix 59	59	D	205	215	Right-handed alpha
Helix 60	60	D	226	236	Right-handed alpha
Helix 61	61	D	237	239	Right-handed 310
Helix 62	62	D	249	259	Right-handed alpha
Helix 63	63	D	297	310	Right-handed alpha
Helix 64	64	D	324	335	Right-handed alpha

There are 18 sheets in PDB entry 3JV7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	58	59	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	28	36	anti-parallel
Strand 3	A	63	71	anti-parallel
Strand 4	A	83	86	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	28	36	anti-parallel
Strand 3	A	340	343	anti-parallel
Strand 4	A	317	320	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	198	203	parallel
Strand 3	A	174	178	parallel
Strand 4	A	240	245	parallel
Strand 5	A	260	268	parallel
Strand 6	A	289	291	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	D	277	279	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	58	59	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	28	36	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	83	86	anti-parallel
Strand 5	B	137	139	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	28	36	anti-parallel
Strand 3	B	340	343	anti-parallel
Strand 4	B	317	320	parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	222	first strand
Strand 2	B	198	203	parallel
Strand 3	B	174	178	parallel
Strand 4	B	240	245	parallel
Strand 5	B	260	268	parallel
Strand 6	B	289	291	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	C	277	279	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	58	59	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	28	36	anti-parallel
Strand 3	C	63	71	anti-parallel
Strand 4	C	83	86	anti-parallel
Strand 5	C	137	139	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	28	36	anti-parallel
Strand 3	C	340	343	anti-parallel
Strand 4	C	317	320	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	222	first strand
Strand 2	C	198	203	parallel
Strand 3	C	174	178	parallel
Strand 4	C	240	245	parallel
Strand 5	C	260	268	parallel
Strand 6	C	289	291	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	58	59	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	28	36	anti-parallel
Strand 3	D	63	71	anti-parallel
Strand 4	D	83	86	anti-parallel
Strand 5	D	137	139	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	28	36	anti-parallel
Strand 3	D	340	343	anti-parallel
Strand 4	D	317	320	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	222	first strand
Strand 2	D	198	203	parallel
Strand 3	D	174	178	parallel
Strand 4	D	240	245	parallel
Strand 5	D	260	268	parallel
Strand 6	D	289	291	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JV7

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JV7