Analysis of interatomic Contacts of Structural Units in PDB entry:
3JVA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JVA entry

There are 8 chains in PDB entry 3JVA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 353
B	MET 1	HIS 354
C	MET 1	HIS 354
D	MET 1	HIS 354
E	MET 1	SER 353
F	MET 1	HIS 354
G	MET 1	HIS 354
H	MET 1	HIS 354

There are110 helices in PDB entry 3JVA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	58	71	Right-handed alpha
Helix 2	2	A	80	92	Right-handed alpha
Helix 3	3	A	95	115	Right-handed alpha
Helix 4	4	A	117	122	Right-handed alpha
Helix 5	5	A	139	153	Right-handed alpha
Helix 6	6	A	165	181	Right-handed alpha
Helix 7	7	A	195	206	Right-handed alpha
Helix 8	8	A	222	233	Right-handed alpha
Helix 9	9	A	245	256	Right-handed alpha
Helix 10	10	A	264	269	Right-handed alpha
Helix 11	11	A	270	284	Right-handed alpha
Helix 12	12	A	297	311	Right-handed alpha
Helix 13	13	A	320	325	Right-handed 310
Helix 14	14	B	58	74	Right-handed alpha
Helix 15	15	B	80	92	Right-handed alpha
Helix 16	16	B	95	115	Right-handed alpha
Helix 17	17	B	117	122	Right-handed alpha
Helix 18	18	B	139	153	Right-handed alpha
Helix 19	19	B	165	181	Right-handed alpha
Helix 20	20	B	195	207	Right-handed alpha
Helix 21	21	B	208	210	Right-handed 310
Helix 22	22	B	222	233	Right-handed alpha
Helix 23	23	B	245	256	Right-handed alpha
Helix 24	24	B	264	269	Right-handed alpha
Helix 25	25	B	270	285	Right-handed alpha
Helix 26	26	B	297	311	Right-handed alpha
Helix 27	27	B	320	325	Right-handed 310
Helix 28	28	C	58	73	Right-handed alpha
Helix 29	29	C	80	92	Right-handed alpha
Helix 30	30	C	95	115	Right-handed alpha
Helix 31	31	C	117	122	Right-handed alpha
Helix 32	32	C	139	153	Right-handed alpha
Helix 33	33	C	165	181	Right-handed alpha
Helix 34	34	C	195	207	Right-handed alpha
Helix 35	35	C	208	210	Right-handed 310
Helix 36	36	C	222	233	Right-handed alpha
Helix 37	37	C	245	256	Right-handed alpha
Helix 38	38	C	264	269	Right-handed alpha
Helix 39	39	C	270	284	Right-handed alpha
Helix 40	40	C	297	311	Right-handed alpha
Helix 41	41	C	320	325	Right-handed 310
Helix 42	42	D	58	73	Right-handed alpha
Helix 43	43	D	80	92	Right-handed alpha
Helix 44	44	D	95	115	Right-handed alpha
Helix 45	45	D	117	122	Right-handed alpha
Helix 46	46	D	139	153	Right-handed alpha
Helix 47	47	D	165	181	Right-handed alpha
Helix 48	48	D	195	207	Right-handed alpha
Helix 49	49	D	208	210	Right-handed 310
Helix 50	50	D	222	233	Right-handed alpha
Helix 51	51	D	245	256	Right-handed alpha
Helix 52	52	D	264	269	Right-handed alpha
Helix 53	53	D	270	285	Right-handed alpha
Helix 54	54	D	297	311	Right-handed alpha
Helix 55	55	D	320	325	Right-handed 310
Helix 56	56	E	58	71	Right-handed alpha
Helix 57	57	E	80	92	Right-handed alpha
Helix 58	58	E	95	115	Right-handed alpha
Helix 59	59	E	117	122	Right-handed alpha
Helix 60	60	E	139	153	Right-handed alpha
Helix 61	61	E	165	181	Right-handed alpha
Helix 62	62	E	195	206	Right-handed alpha
Helix 63	63	E	222	233	Right-handed alpha
Helix 64	64	E	245	256	Right-handed alpha
Helix 65	65	E	264	269	Right-handed alpha
Helix 66	66	E	270	284	Right-handed alpha
Helix 67	67	E	297	311	Right-handed alpha
Helix 68	68	E	320	325	Right-handed 310
Helix 69	69	F	58	73	Right-handed alpha
Helix 70	70	F	80	92	Right-handed alpha
Helix 71	71	F	95	115	Right-handed alpha
Helix 72	72	F	117	122	Right-handed 310
Helix 73	73	F	139	153	Right-handed alpha
Helix 74	74	F	165	181	Right-handed alpha
Helix 75	75	F	195	207	Right-handed alpha
Helix 76	76	F	208	210	Right-handed 310
Helix 77	77	F	222	233	Right-handed alpha
Helix 78	78	F	245	256	Right-handed alpha
Helix 79	79	F	264	269	Right-handed alpha
Helix 80	80	F	270	285	Right-handed alpha
Helix 81	81	F	297	311	Right-handed alpha
Helix 82	82	F	320	325	Right-handed 310
Helix 83	83	G	58	73	Right-handed alpha
Helix 84	84	G	80	92	Right-handed alpha
Helix 85	85	G	95	115	Right-handed alpha
Helix 86	86	G	117	122	Right-handed alpha
Helix 87	87	G	139	153	Right-handed alpha
Helix 88	88	G	165	181	Right-handed alpha
Helix 89	89	G	195	207	Right-handed alpha
Helix 90	90	G	208	210	Right-handed 310
Helix 91	91	G	222	233	Right-handed alpha
Helix 92	92	G	245	256	Right-handed alpha
Helix 93	93	G	264	269	Right-handed alpha
Helix 94	94	G	270	284	Right-handed alpha
Helix 95	95	G	297	311	Right-handed alpha
Helix 96	96	G	320	325	Right-handed 310
Helix 97	97	H	58	73	Right-handed alpha
Helix 98	98	H	80	92	Right-handed alpha
Helix 99	99	H	95	115	Right-handed alpha
Helix 100	100	H	117	122	Right-handed alpha
Helix 101	101	H	139	153	Right-handed alpha
Helix 102	102	H	165	181	Right-handed alpha
Helix 103	103	H	195	207	Right-handed alpha
Helix 104	104	H	208	210	Right-handed 310
Helix 105	105	H	222	233	Right-handed alpha
Helix 106	106	H	245	256	Right-handed alpha
Helix 107	107	H	264	269	Right-handed alpha
Helix 108	108	H	270	285	Right-handed alpha
Helix 109	109	H	297	311	Right-handed alpha
Helix 110	110	H	320	325	Right-handed 310

There are 31 sheets in PDB entry 3JVA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	21	first strand
Strand 2	A	24	38	anti-parallel
Strand 3	A	43	48	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	341	343	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	157	161	parallel
Strand 3	A	185	189	parallel
Strand 4	A	211	215	parallel
Strand 5	A	236	239	parallel
Strand 6	A	260	263	parallel
Strand 7	A	287	290	parallel
Strand 8	A	314	317	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	21	first strand
Strand 2	B	24	38	anti-parallel
Strand 3	B	43	48	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	341	343	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	157	161	parallel
Strand 3	B	185	189	parallel
Strand 4	B	213	215	parallel
Strand 5	B	236	239	parallel
Strand 6	B	260	263	parallel
Strand 7	B	287	290	parallel
Strand 8	B	314	317	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	332	first strand
Strand 2	B	352	353	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	12	first strand
Strand 2	C	30	38	anti-parallel
Strand 3	C	43	48	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	341	343	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	157	161	parallel
Strand 3	C	185	189	parallel
Strand 4	C	213	215	parallel
Strand 5	C	236	239	parallel
Strand 6	C	260	263	parallel
Strand 7	C	287	290	parallel
Strand 8	C	314	317	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	332	first strand
Strand 2	C	352	353	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	14	first strand
Strand 2	D	28	38	anti-parallel
Strand 3	D	43	48	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	341	343	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	157	161	parallel
Strand 3	D	185	189	parallel
Strand 4	D	213	215	parallel
Strand 5	D	236	239	parallel
Strand 6	D	260	263	parallel
Strand 7	D	287	290	parallel
Strand 8	D	314	317	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	332	first strand
Strand 2	D	352	353	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	21	first strand
Strand 2	E	24	38	anti-parallel
Strand 3	E	43	48	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	341	343	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	135	first strand
Strand 2	E	157	161	parallel
Strand 3	E	185	189	parallel
Strand 4	E	211	215	parallel
Strand 5	E	236	239	parallel
Strand 6	E	260	263	parallel
Strand 7	E	287	290	parallel
Strand 8	E	314	317	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	332	first strand
Strand 2	E	352	353	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	21	first strand
Strand 2	F	24	38	anti-parallel
Strand 3	F	43	48	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	130	first strand
Strand 2	F	341	343	anti-parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	157	161	parallel
Strand 3	F	185	189	parallel
Strand 4	F	213	215	parallel
Strand 5	F	236	239	parallel
Strand 6	F	260	263	parallel
Strand 7	F	287	290	parallel
Strand 8	F	314	317	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	331	332	first strand
Strand 2	F	352	353	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	13	first strand
Strand 2	G	29	38	anti-parallel
Strand 3	G	43	48	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	130	first strand
Strand 2	G	341	343	anti-parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	135	first strand
Strand 2	G	157	161	parallel
Strand 3	G	185	189	parallel
Strand 4	G	213	215	parallel
Strand 5	G	236	239	parallel
Strand 6	G	260	263	parallel
Strand 7	G	287	290	parallel
Strand 8	G	314	317	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	331	332	first strand
Strand 2	G	352	353	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	14	first strand
Strand 2	H	28	38	anti-parallel
Strand 3	H	43	48	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	130	first strand
Strand 2	H	341	343	anti-parallel

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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	134	first strand
Strand 2	H	157	161	parallel
Strand 3	H	185	189	parallel
Strand 4	H	213	215	parallel
Strand 5	H	236	239	parallel
Strand 6	H	260	263	parallel
Strand 7	H	287	290	parallel
Strand 8	H	314	317	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	331	332	first strand
Strand 2	H	352	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JVA

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JVA