Analysis of interatomic Contacts of Structural Units in PDB entry:
3JVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JVC entry

There are 3 chains in PDB entry 3JVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 135LEU 250
B
 PHE 135LEU 250
C
 PHE 135THR 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3JVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
135 140Right-handed alpha
Helix 2
2
A
159 163Right-handed 310
Helix 3
3
A
164 170Right-handed alpha
Helix 4
4
A
171 174Right-handed 310
Helix 5
5
A
200 208Right-handed alpha
Helix 6
6
B
164 172Right-handed alpha
Helix 7
7
B
200 208Right-handed alpha
Helix 8
8
C
159 163Right-handed 310
Helix 9
9
C
164 170Right-handed alpha
Helix 10
10
C
171 174Right-handed 310
Helix 11
11
C
200 208Right-handed alpha
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There are 6 sheets in PDB entry 3JVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 152first strand
Strand 2
A
176 180anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 195first strand
Strand 2
A
210 218anti-parallel
Strand 3
A
224 231anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
176 180anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 195first strand
Strand 2
B
210 217anti-parallel
Strand 3
B
225 231anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 152first strand
Strand 2
C
176 180anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 195first strand
Strand 2
C
210 217anti-parallel
Strand 3
C
224 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il