Analysis of interatomic Contacts of Structural Units in PDB entry:
3JVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JVG entry

There are 4 chains in PDB entry 3JVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	HIS 277
B	SER 6	HIS 277
C	ASP 1	PHE 98
D	ASP 1	PHE 98

There are 15 helices in PDB entry 3JVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	52	57	Right-handed alpha
Helix 2	2	A	58	84	Right-handed alpha
Helix 3	3	A	135	147	Right-handed alpha
Helix 4	4	A	148	161	Right-handed alpha
Helix 5	5	A	161	174	Right-handed alpha
Helix 6	6	A	174	179	Right-handed alpha
Helix 7	7	A	264	268	Right-handed 310
Helix 8	8	B	52	57	Right-handed alpha
Helix 9	9	B	58	84	Right-handed alpha
Helix 10	10	B	135	147	Right-handed alpha
Helix 11	11	B	148	161	Right-handed alpha
Helix 12	12	B	161	174	Right-handed alpha
Helix 13	13	B	174	179	Right-handed alpha
Helix 14	14	B	251	255	Right-handed 310
Helix 15	15	B	264	268	Right-handed 310

There are 14 sheets in PDB entry 3JVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	22	31	anti-parallel
Strand 4	A	7	19	anti-parallel
Strand 5	A	90	100	anti-parallel
Strand 6	A	106	114	anti-parallel
Strand 7	A	117	123	anti-parallel
Strand 8	A	128	131	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	198	207	anti-parallel
Strand 3	A	242	250	anti-parallel
Strand 4	A	229	231	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	198	207	anti-parallel
Strand 3	A	242	250	anti-parallel
Strand 4	A	235	236	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	258	263	anti-parallel
Strand 4	A	272	275	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	22	31	anti-parallel
Strand 4	B	7	19	anti-parallel
Strand 5	B	90	100	anti-parallel
Strand 6	B	106	114	anti-parallel
Strand 7	B	117	123	anti-parallel
Strand 8	B	128	131	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	198	207	anti-parallel
Strand 3	B	242	250	anti-parallel
Strand 4	B	229	231	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	198	207	anti-parallel
Strand 3	B	242	250	anti-parallel
Strand 4	B	235	236	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	213	218	anti-parallel
Strand 3	B	258	263	anti-parallel
Strand 4	B	272	275	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	20	29	anti-parallel
Strand 3	C	61	69	anti-parallel
Strand 4	C	49	50	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	20	29	anti-parallel
Strand 3	C	61	69	anti-parallel
Strand 4	C	54	55	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	90	93	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	20	29	anti-parallel
Strand 3	D	61	69	anti-parallel
Strand 4	D	49	50	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	20	29	anti-parallel
Strand 3	D	61	69	anti-parallel
Strand 4	D	54	55	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	44	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	90	93	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JVG