Analysis of interatomic Contacts of Structural Units in PDB entry:
3JVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JVU entry

There are 3 chains in PDB entry 3JVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 342
B
 MET 1GLY 322
C
 MET 1GLU 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 3JVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
43 53Right-handed alpha
Helix 3
3
A
56 67Right-handed alpha
Helix 4
4
A
112 121Right-handed alpha
Helix 5
5
A
135 149Right-handed alpha
Helix 6
6
A
184 193Right-handed alpha
Helix 7
7
A
207 220Right-handed alpha
Helix 8
8
A
232 243Right-handed alpha
Helix 9
9
A
244 247Right-handed 310
Helix 10
10
A
248 259Right-handed alpha
Helix 11
11
A
286 295Right-handed alpha
Helix 12
12
A
298 300Right-handed 310
Helix 13
13
A
301 307Right-handed alpha
Helix 14
14
A
308 312Right-handed 310
Helix 15
15
A
315 323Right-handed alpha
Helix 16
16
A
330 336Right-handed alpha
Helix 17
17
B
2 13Right-handed alpha
Helix 18
18
B
43 53Right-handed alpha
Helix 19
19
B
56 67Right-handed alpha
Helix 20
20
B
106 110Right-handed 310
Helix 21
21
B
112 121Right-handed alpha
Helix 22
22
B
135 149Right-handed alpha
Helix 23
23
B
184 193Right-handed alpha
Helix 24
24
B
207 221Right-handed alpha
Helix 25
25
B
232 243Right-handed alpha
Helix 26
26
B
244 247Right-handed 310
Helix 27
27
B
248 259Right-handed alpha
Helix 28
28
B
286 293Right-handed alpha
Helix 29
29
B
298 300Right-handed 310
Helix 30
30
B
301 307Right-handed alpha
Helix 31
31
B
308 312Right-handed 310
Helix 32
32
B
315 322Right-handed alpha
Helix 33
33
C
2 13Right-handed alpha
Helix 34
34
C
43 53Right-handed alpha
Helix 35
35
C
56 67Right-handed alpha
Helix 36
36
C
112 121Right-handed alpha
Helix 37
37
C
135 149Right-handed alpha
Helix 38
38
C
184 193Right-handed alpha
Helix 39
39
C
207 220Right-handed alpha
Helix 40
40
C
232 243Right-handed alpha
Helix 41
41
C
244 247Right-handed 310
Helix 42
42
C
248 259Right-handed alpha
Helix 43
43
C
286 295Right-handed alpha
Helix 44
44
C
298 300Right-handed 310
Helix 45
45
C
301 307Right-handed alpha
Helix 46
46
C
315 323Right-handed alpha
Helix 47
47
C
330 336Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3JVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
24 30anti-parallel
Strand 3
A
17 21anti-parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
79 88anti-parallel
Strand 6
A
68 75anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
154 159parallel
Strand 3
A
199 202parallel
Strand 4
A
223 226parallel
Strand 5
A
124 129parallel
Strand 6
A
260 269parallel
Strand 7
A
277 284anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
24 30anti-parallel
Strand 3
B
17 21anti-parallel
Strand 4
B
91 98anti-parallel
Strand 5
B
79 88anti-parallel
Strand 6
B
68 75anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 177first strand
Strand 2
B
154 159parallel
Strand 3
B
199 202parallel
Strand 4
B
223 226parallel
Strand 5
B
124 129parallel
Strand 6
B
260 269parallel
Strand 7
B
277 284anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 36first strand
Strand 2
C
24 30anti-parallel
Strand 3
C
17 21anti-parallel
Strand 4
C
91 98anti-parallel
Strand 5
C
79 88anti-parallel
Strand 6
C
68 75anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 177first strand
Strand 2
C
154 159parallel
Strand 3
C
199 204parallel
Strand 4
C
223 227parallel
Strand 5
C
124 129parallel
Strand 6
C
260 270parallel
Strand 7
C
276 284anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il