Analysis of interatomic Contacts of Structural Units in PDB entry:
3JVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JVV entry

There are 3 chains in PDB entry 3JVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 342
B
 MET 1GLU 342
C
 MET 1GLU 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3JVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
43 55Right-handed alpha
Helix 3
3
A
56 67Right-handed alpha
Helix 4
4
A
112 121Right-handed alpha
Helix 5
5
A
135 151Right-handed alpha
Helix 6
6
A
184 193Right-handed alpha
Helix 7
7
A
207 220Right-handed alpha
Helix 8
8
A
232 243Right-handed alpha
Helix 9
9
A
245 259Right-handed alpha
Helix 10
10
A
286 296Right-handed alpha
Helix 11
11
A
297 299Right-handed 310
Helix 12
12
A
300 307Right-handed alpha
Helix 13
13
A
308 312Right-handed 310
Helix 14
14
A
315 321Right-handed alpha
Helix 15
15
A
330 337Right-handed alpha
Helix 16
16
B
2 13Right-handed alpha
Helix 17
17
B
43 55Right-handed alpha
Helix 18
18
B
56 67Right-handed alpha
Helix 19
19
B
112 121Right-handed alpha
Helix 20
20
B
135 151Right-handed alpha
Helix 21
21
B
184 193Right-handed alpha
Helix 22
22
B
207 220Right-handed alpha
Helix 23
23
B
232 243Right-handed alpha
Helix 24
24
B
245 259Right-handed alpha
Helix 25
25
B
286 295Right-handed alpha
Helix 26
26
B
297 299Right-handed 310
Helix 27
27
B
300 307Right-handed alpha
Helix 28
28
B
308 312Right-handed 310
Helix 29
29
B
315 321Right-handed alpha
Helix 30
30
B
330 337Right-handed alpha
Helix 31
31
C
2 13Right-handed alpha
Helix 32
32
C
43 55Right-handed alpha
Helix 33
33
C
56 67Right-handed alpha
Helix 34
34
C
112 121Right-handed alpha
Helix 35
35
C
135 151Right-handed alpha
Helix 36
36
C
184 193Right-handed alpha
Helix 37
37
C
207 220Right-handed alpha
Helix 38
38
C
232 243Right-handed alpha
Helix 39
39
C
245 259Right-handed alpha
Helix 40
40
C
286 295Right-handed alpha
Helix 41
41
C
297 299Right-handed 310
Helix 42
42
C
300 307Right-handed alpha
Helix 43
43
C
308 312Right-handed 310
Helix 44
44
C
315 321Right-handed alpha
Helix 45
45
C
330 337Right-handed alpha
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There are 6 sheets in PDB entry 3JVV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
27 30anti-parallel
Strand 3
A
17 21anti-parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
79 88anti-parallel
Strand 6
A
69 75anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
154 159parallel
Strand 3
A
199 202parallel
Strand 4
A
223 228parallel
Strand 5
A
124 129parallel
Strand 6
A
260 269parallel
Strand 7
A
277 284anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
27 30anti-parallel
Strand 3
B
17 21anti-parallel
Strand 4
B
91 98anti-parallel
Strand 5
B
79 88anti-parallel
Strand 6
B
69 75anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 177first strand
Strand 2
B
154 159parallel
Strand 3
B
199 202parallel
Strand 4
B
223 228parallel
Strand 5
B
124 129parallel
Strand 6
B
260 267parallel
Strand 7
B
279 284anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 36first strand
Strand 2
C
27 30anti-parallel
Strand 3
C
17 21anti-parallel
Strand 4
C
91 99anti-parallel
Strand 5
C
79 88anti-parallel
Strand 6
C
69 75anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 177first strand
Strand 2
C
154 159parallel
Strand 3
C
199 202parallel
Strand 4
C
223 228parallel
Strand 5
C
124 129parallel
Strand 6
C
260 270parallel
Strand 7
C
276 284anti-parallel
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