Analysis of interatomic Contacts of Structural Units in PDB entry:
3JW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JW8 entry

There are 2 chains in PDB entry 3JW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16ALA 305
B
 ASP 28ALA 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3JW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 29Right-handed 310
Helix 2
2
A
64 67Right-handed 310
Helix 3
3
A
68 78Right-handed alpha
Helix 4
4
A
103 121Right-handed alpha
Helix 5
5
A
133 145Right-handed alpha
Helix 6
6
A
167 181Right-handed alpha
Helix 7
7
A
190 194Right-handed 310
Helix 8
8
A
197 207Right-handed alpha
Helix 9
9
A
216 234Right-handed alpha
Helix 10
10
A
235 237Right-handed 310
Helix 11
11
A
253 264Right-handed alpha
Helix 12
12
A
280 284Right-handed 310
Helix 13
13
A
285 303Right-handed alpha
Helix 14
14
B
64 67Right-handed 310
Helix 15
15
B
68 77Right-handed alpha
Helix 16
16
B
103 121Right-handed alpha
Helix 17
17
B
133 145Right-handed alpha
Helix 18
18
B
167 181Right-handed alpha
Helix 19
19
B
190 194Right-handed 310
Helix 20
20
B
197 207Right-handed alpha
Helix 21
21
B
216 234Right-handed alpha
Helix 22
22
B
235 237Right-handed 310
Helix 23
23
B
253 264Right-handed alpha
Helix 24
24
B
280 284Right-handed 310
Helix 25
25
B
285 303Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3JW8.

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
53 58parallel
Strand 5
A
126 131parallel
Strand 6
A
151 155parallel
Strand 7
A
241 246parallel
Strand 8
A
269 274parallel
Strand 9
B
269 274anti-parallel
Strand 10
B
241 246parallel
Strand 11
B
151 155parallel
Strand 12
B
126 131parallel
Strand 13
B
53 58parallel
Strand 14
B
80 85parallel
Strand 15
B
39 45anti-parallel
Strand 16
B
31 33anti-parallel
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