Analysis of interatomic Contacts of Structural Units in PDB entry:
3JWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JWA entry

There are 3 chains in PDB entry 3JWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 3
A
 ARG 5THR 209
A
 TYR 211THR 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3JWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
8 16Right-handed alpha
Helix 3
3
A
41 50Right-handed alpha
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
87 100Right-handed alpha
Helix 6
6
A
113 127Right-handed alpha
Helix 7
7
A
138 146Right-handed alpha
Helix 8
8
A
167 178Right-handed alpha
Helix 9
9
A
195 200Right-handed 310
Helix 10
10
A
226 236Right-handed alpha
Helix 11
11
A
236 241Right-handed alpha
Helix 12
12
A
247 259Right-handed alpha
Helix 13
13
A
260 281Right-handed alpha
Helix 14
14
A
298 306Right-handed alpha
Helix 15
15
A
319 329Right-handed alpha
Helix 16
16
A
359 366Right-handed alpha
Helix 17
17
A
381 397Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3JWA. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
181 185parallel
Strand 5
A
150 156parallel
Strand 6
A
105 109parallel
Strand 7
A
130 134parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
312 317anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
346 348anti-parallel
Strand 5
A
335 336parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il