Analysis of interatomic Contacts of Structural Units in PDB entry:
3JWO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JWO entry

There are 4 chains in PDB entry 3JWO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 34ALA 497
C
 MET 1000SER 1183
L
 ASP 1ASN 210
H
 GLU 1LYS 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3JWO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 74Right-handed alpha
Helix 2
2
A
98 115Right-handed alpha
Helix 3
3
A
335 353Right-handed alpha
Helix 4
4
A
368 373Right-handed alpha
Helix 5
5
A
387 391Right-handed 310
Helix 6
6
A
474 484Right-handed alpha
Helix 7
7
C
1058 1065Right-handed 310
Helix 8
8
C
1075 1079Right-handed 310
Helix 9
9
C
1150 1154Right-handed 310
Helix 10
10
L
79 83Right-handed 310
Helix 11
11
L
121 125Right-handed 310
Helix 12
12
L
182 187Right-handed alpha
Helix 13
13
H
28 32Right-handed 310
Helix 14
14
H
83 87Right-handed 310
Helix 15
15
H
127 129Right-handed 310
Helix 16
16
H
156 158Right-handed 310
Helix 17
17
H
187 189Right-handed 310
Helix 18
18
H
201 204Right-handed 310
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There are 23 sheets in PDB entry 3JWO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
495 497anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
485 492anti-parallel
Strand 3
A
222 229anti-parallel
Strand 4
A
241 245anti-parallel
Strand 5
A
84 86anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
53 56parallel
Strand 3
A
215 219anti-parallel
Strand 4
A
246 251anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 95first strand
Strand 2
A
235 239anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
119 123anti-parallel
Strand 3
A
431 435anti-parallel
Strand 4
A
422 426anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 262first strand
Strand 2
A
450 453anti-parallel
Strand 3
A
285 288anti-parallel
Strand 4
A
271 273anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 449first strand
Strand 2
A
292 298anti-parallel
Strand 3
A
329 334anti-parallel
Strand 4
A
412 420anti-parallel
Strand 5
A
381 386anti-parallel
Strand 6
A
374 378anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 457first strand
Strand 2
A
464 471anti-parallel
Strand 3
A
358 362anti-parallel
Strand 4
A
393 395anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1002 1007first strand
Strand 2
C
1089 1103parallel
Strand 3
C
1080 1086anti-parallel
Strand 4
C
1026 1029anti-parallel
Strand 5
C
1035 1039anti-parallel
Strand 6
C
1044 1046anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1002 1007first strand
Strand 2
C
1089 1103parallel
Strand 3
C
1114 1119anti-parallel
Strand 4
C
1143 1146anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1012 1014first strand
Strand 2
C
1069 1071anti-parallel
Strand 3
C
1055 1056anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1106 1107first strand
Strand 2
C
1111 1112anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1137 1140first strand
Strand 2
C
1127 1131anti-parallel
Strand 3
C
1155 1163anti-parallel
Strand 4
C
1166 1174anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
130 139anti-parallel
Strand 3
L
173 180anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 155first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
192 197anti-parallel
Strand 4
L
205 209anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 94anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 94anti-parallel
Strand 4
H
102 103anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 121first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
163 165anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 132first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
169 170anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 154first strand
Strand 2
H
194 200anti-parallel
Strand 3
H
205 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il