Analysis of interatomic Contacts of Structural Units in PDB entry:
3JX8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JX8 entry

There are 6 chains in PDB entry 3JX8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	LYS 269
B	ASP 23	LYS 269
C	ASP 23	LYS 269
D	LYS 24	LYS 269
E	ASP 23	LYS 269
F	ASP 23	LYS 269

There are 6 helices in PDB entry 3JX8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	71	74	Right-handed 310
Helix 2	2	B	71	74	Right-handed 310
Helix 3	3	C	71	74	Right-handed 310
Helix 4	4	D	71	74	Right-handed 310
Helix 5	5	E	71	74	Right-handed 310
Helix 6	6	F	71	74	Right-handed 310

There are 18 sheets in PDB entry 3JX8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	102	104	parallel

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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	63	69	anti-parallel
Strand 3	A	108	114	anti-parallel
Strand 4	A	52	57	parallel
Strand 5	A	127	130	parallel
Strand 6	A	148	151	parallel
Strand 7	A	169	185	parallel
Strand 8	A	189	204	parallel
Strand 9	A	208	224	parallel
Strand 10	A	228	242	parallel
Strand 11	A	254	260	parallel

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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	44	48	parallel
Strand 4	A	119	123	parallel
Strand 5	A	134	144	parallel
Strand 6	A	155	165	parallel
Strand 7	A	169	185	parallel
Strand 8	A	189	204	parallel
Strand 9	A	208	224	parallel
Strand 10	A	228	242	parallel
Strand 11	A	246	250	parallel
Strand 12	A	264	267	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	102	104	parallel

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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	63	69	anti-parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	52	57	parallel
Strand 5	B	127	130	parallel
Strand 6	B	148	151	parallel
Strand 7	B	169	185	parallel
Strand 8	B	189	204	parallel
Strand 9	B	208	224	parallel
Strand 10	B	228	242	parallel
Strand 11	B	254	260	parallel

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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	81	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	44	48	parallel
Strand 4	B	119	123	parallel
Strand 5	B	134	144	parallel
Strand 6	B	155	165	parallel
Strand 7	B	169	185	parallel
Strand 8	B	189	204	parallel
Strand 9	B	208	224	parallel
Strand 10	B	228	242	parallel
Strand 11	B	246	250	parallel
Strand 12	B	264	267	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	27	first strand
Strand 2	C	102	104	parallel

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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	36	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	108	114	anti-parallel
Strand 4	C	52	57	parallel
Strand 5	C	127	130	parallel
Strand 6	C	148	151	parallel
Strand 7	C	169	185	parallel
Strand 8	C	189	204	parallel
Strand 9	C	208	224	parallel
Strand 10	C	228	242	parallel
Strand 11	C	254	260	parallel

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There are 12 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	81	first strand
Strand 2	C	84	89	anti-parallel
Strand 3	C	44	48	parallel
Strand 4	C	119	123	parallel
Strand 5	C	134	144	parallel
Strand 6	C	155	165	parallel
Strand 7	C	169	185	parallel
Strand 8	C	189	204	parallel
Strand 9	C	208	224	parallel
Strand 10	C	228	242	parallel
Strand 11	C	246	250	parallel
Strand 12	C	264	267	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	27	first strand
Strand 2	D	102	104	parallel

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There are 11 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	63	69	anti-parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	52	57	parallel
Strand 5	D	127	130	parallel
Strand 6	D	148	151	parallel
Strand 7	D	169	185	parallel
Strand 8	D	189	204	parallel
Strand 9	D	208	224	parallel
Strand 10	D	228	242	parallel
Strand 11	D	254	260	parallel

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There are 12 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	81	first strand
Strand 2	D	84	89	anti-parallel
Strand 3	D	44	48	parallel
Strand 4	D	119	123	parallel
Strand 5	D	134	144	parallel
Strand 6	D	155	165	parallel
Strand 7	D	169	185	parallel
Strand 8	D	189	204	parallel
Strand 9	D	208	224	parallel
Strand 10	D	228	242	parallel
Strand 11	D	246	250	parallel
Strand 12	D	264	267	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	27	first strand
Strand 2	E	102	104	parallel

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There are 11 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	36	first strand
Strand 2	E	63	69	anti-parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	52	57	parallel
Strand 5	E	127	130	parallel
Strand 6	E	148	151	parallel
Strand 7	E	169	185	parallel
Strand 8	E	189	204	parallel
Strand 9	E	208	224	parallel
Strand 10	E	228	242	parallel
Strand 11	E	254	260	parallel

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There are 12 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	81	first strand
Strand 2	E	84	89	anti-parallel
Strand 3	E	44	48	parallel
Strand 4	E	119	123	parallel
Strand 5	E	134	144	parallel
Strand 6	E	155	165	parallel
Strand 7	E	169	185	parallel
Strand 8	E	189	204	parallel
Strand 9	E	208	224	parallel
Strand 10	E	228	242	parallel
Strand 11	E	246	250	parallel
Strand 12	E	264	267	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	27	first strand
Strand 2	F	102	104	parallel

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There are 11 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	36	first strand
Strand 2	F	63	69	anti-parallel
Strand 3	F	108	114	anti-parallel
Strand 4	F	52	57	parallel
Strand 5	F	127	130	parallel
Strand 6	F	148	151	parallel
Strand 7	F	169	185	parallel
Strand 8	F	189	204	parallel
Strand 9	F	208	224	parallel
Strand 10	F	228	242	parallel
Strand 11	F	254	260	parallel

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There are 12 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	81	first strand
Strand 2	F	84	89	anti-parallel
Strand 3	F	44	48	parallel
Strand 4	F	119	123	parallel
Strand 5	F	134	144	parallel
Strand 6	F	155	165	parallel
Strand 7	F	169	185	parallel
Strand 8	F	189	204	parallel
Strand 9	F	208	224	parallel
Strand 10	F	228	242	parallel
Strand 11	F	246	250	parallel
Strand 12	F	264	267	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JX8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JX8