Analysis of interatomic Contacts of Structural Units in PDB entry:
3JXG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JXG entry

There are 4 chains in PDB entry 3JXG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 58	SER 320
B	PRO 58	SER 320
C	ASP 57	SER 320
D	PRO 58	SER 320

There are 34 helices in PDB entry 3JXG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	63	74	Right-handed 310
Helix 2	2	A	75	80	Right-handed 310
Helix 3	3	A	89	93	Right-handed 310
Helix 4	4	A	186	193	Right-handed alpha
Helix 5	5	A	211	213	Right-handed 310
Helix 6	6	A	214	223	Right-handed alpha
Helix 7	7	A	237	242	Right-handed 310
Helix 8	8	A	277	286	Right-handed alpha
Helix 9	9	B	63	69	Right-handed 310
Helix 10	10	B	70	75	Right-handed alpha
Helix 11	11	B	76	80	Right-handed 310
Helix 12	12	B	89	93	Right-handed 310
Helix 13	13	B	186	194	Right-handed alpha
Helix 14	14	B	211	213	Right-handed 310
Helix 15	15	B	214	223	Right-handed alpha
Helix 16	16	B	237	242	Right-handed 310
Helix 17	17	B	278	285	Right-handed alpha
Helix 18	18	C	63	74	Right-handed 310
Helix 19	19	C	75	80	Right-handed 310
Helix 20	20	C	89	93	Right-handed 310
Helix 21	21	C	186	193	Right-handed alpha
Helix 22	22	C	211	213	Right-handed 310
Helix 23	23	C	214	223	Right-handed alpha
Helix 24	24	C	237	242	Right-handed 310
Helix 25	25	C	278	282	Right-handed alpha
Helix 26	26	C	283	286	Right-handed 310
Helix 27	27	D	63	74	Right-handed 310
Helix 28	28	D	75	80	Right-handed 310
Helix 29	29	D	89	93	Right-handed 310
Helix 30	30	D	186	193	Right-handed alpha
Helix 31	31	D	211	213	Right-handed 310
Helix 32	32	D	214	224	Right-handed alpha
Helix 33	33	D	237	242	Right-handed 310
Helix 34	34	D	278	286	Right-handed alpha

There are 16 sheets in PDB entry 3JXG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	164	165	parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	318	319	parallel
Strand 3	A	249	254	anti-parallel
Strand 4	A	265	270	anti-parallel
Strand 5	A	197	206	parallel
Strand 6	A	172	179	anti-parallel
Strand 7	A	143	152	anti-parallel
Strand 8	A	124	127	anti-parallel
Strand 9	A	116	119	anti-parallel
Strand 10	A	230	232	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	133	135	anti-parallel
Strand 3	A	143	152	anti-parallel
Strand 4	A	172	179	anti-parallel
Strand 5	A	197	206	anti-parallel
Strand 6	A	274	276	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	300	301	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	164	165	parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	318	319	parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	265	270	anti-parallel
Strand 5	B	197	207	parallel
Strand 6	B	172	179	anti-parallel
Strand 7	B	143	152	anti-parallel
Strand 8	B	124	127	anti-parallel
Strand 9	B	116	119	anti-parallel
Strand 10	B	230	232	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	133	135	anti-parallel
Strand 3	B	143	152	anti-parallel
Strand 4	B	172	179	anti-parallel
Strand 5	B	197	207	anti-parallel
Strand 6	B	274	277	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	291	first strand
Strand 2	B	298	301	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	164	165	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	133	135	anti-parallel
Strand 3	C	143	152	anti-parallel
Strand 4	C	172	179	anti-parallel
Strand 5	C	197	207	anti-parallel
Strand 6	C	274	277	parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	232	first strand
Strand 2	C	116	119	anti-parallel
Strand 3	C	124	127	anti-parallel
Strand 4	C	143	152	anti-parallel
Strand 5	C	172	179	anti-parallel
Strand 6	C	197	207	anti-parallel
Strand 7	C	265	270	parallel
Strand 8	C	249	254	anti-parallel
Strand 9	C	318	319	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	293	first strand
Strand 2	C	296	301	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	164	165	parallel

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There are 10 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	318	319	parallel
Strand 3	D	249	254	anti-parallel
Strand 4	D	265	270	anti-parallel
Strand 5	D	197	207	parallel
Strand 6	D	172	179	anti-parallel
Strand 7	D	143	152	anti-parallel
Strand 8	D	124	127	anti-parallel
Strand 9	D	116	119	anti-parallel
Strand 10	D	230	232	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	133	135	anti-parallel
Strand 3	D	143	152	anti-parallel
Strand 4	D	172	179	anti-parallel
Strand 5	D	197	207	anti-parallel
Strand 6	D	274	277	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	292	first strand
Strand 2	D	297	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JXG

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JXG