Analysis of interatomic Contacts of Structural Units in PDB entry:
3JXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JXS entry

There are 3 chains in PDB entry 3JXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 166
B
 MET 1ASP 166
C
 MET 1ASP 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3JXS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 69Right-handed 310
Helix 2
2
A
149 153Right-handed 310
Helix 3
3
B
67 69Right-handed 310
Helix 4
4
B
149 153Right-handed 310
Helix 5
5
C
67 69Right-handed 310
Helix 6
6
C
149 153Right-handed 310
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There are 6 sheets in PDB entry 3JXS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
41 46anti-parallel
Strand 3
A
55 61anti-parallel
Strand 4
A
155 165anti-parallel
Strand 5
A
85 94anti-parallel
Strand 6
A
126 133anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
71 79anti-parallel
Strand 3
A
140 146anti-parallel
Strand 4
A
99 106anti-parallel
Strand 5
A
112 121anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
41 46anti-parallel
Strand 3
B
55 61anti-parallel
Strand 4
B
155 165anti-parallel
Strand 5
B
85 94anti-parallel
Strand 6
B
126 133anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
71 79anti-parallel
Strand 3
B
140 146anti-parallel
Strand 4
B
99 106anti-parallel
Strand 5
B
112 121anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
41 46anti-parallel
Strand 3
C
55 60anti-parallel
Strand 4
C
156 165anti-parallel
Strand 5
C
85 94anti-parallel
Strand 6
C
126 133anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
71 79anti-parallel
Strand 3
C
140 146anti-parallel
Strand 4
C
99 106anti-parallel
Strand 5
C
112 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il