Analysis of interatomic Contacts of Structural Units in PDB entry:
3JXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JXT entry

There are 4 chains in PDB entry 3JXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 397SER 493
B
 THR 399SER 493
C
 ARG 102VAL 106
D
 ARG 102VAL 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3JXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
436 442Right-handed alpha
Helix 2
2
A
462 473Right-handed alpha
Helix 3
3
A
484 489Right-handed alpha
Helix 4
4
B
436 442Right-handed alpha
Helix 5
5
B
462 472Right-handed alpha
Helix 6
6
B
484 489Right-handed alpha
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There are 4 sheets in PDB entry 3JXT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 408first strand
Strand 2
A
476 483anti-parallel
Strand 3
A
448 453anti-parallel
Strand 4
A
456 457anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 432first strand
Strand 2
A
416 420anti-parallel
Strand 3
D
104 106anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 407first strand
Strand 2
B
477 483anti-parallel
Strand 3
B
448 453anti-parallel
Strand 4
B
456 457anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 407first strand
Strand 2
B
477 483anti-parallel
Strand 3
B
448 453anti-parallel
Strand 4
B
427 432anti-parallel
Strand 5
B
416 420anti-parallel
Strand 6
C
104 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il