Analysis of interatomic Contacts of Structural Units in PDB entry:
3JY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JY6 entry

There are 4 chains in PDB entry 3JY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 65GLU 329
B
 LYS 68GLN 328
C
 LYS 68GLN 328
D
 LYS 68GLU 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3JY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 95Right-handed alpha
Helix 2
2
A
108 121Right-handed alpha
Helix 3
3
A
134 143Right-handed alpha
Helix 4
4
A
166 180Right-handed alpha
Helix 5
5
A
196 208Right-handed alpha
Helix 6
6
A
224 238Right-handed alpha
Helix 7
7
A
249 257Right-handed alpha
Helix 8
8
A
257 263Right-handed alpha
Helix 9
9
A
295 312Right-handed alpha
Helix 10
10
B
79 94Right-handed alpha
Helix 11
11
B
95 97Right-handed 310
Helix 12
12
B
108 122Right-handed alpha
Helix 13
13
B
134 143Right-handed alpha
Helix 14
14
B
166 180Right-handed alpha
Helix 15
15
B
193 195Right-handed 310
Helix 16
16
B
196 208Right-handed alpha
Helix 17
17
B
224 238Right-handed alpha
Helix 18
18
B
249 263Right-handed alpha
Helix 19
19
B
295 312Right-handed alpha
Helix 20
30
D
79 95Right-handed alpha
Helix 21
31
D
108 122Right-handed alpha
Helix 22
32
D
134 142Right-handed alpha
Helix 23
33
D
166 180Right-handed alpha
Helix 24
34
D
193 195Right-handed 310
Helix 25
35
D
196 208Right-handed alpha
Helix 26
36
D
225 238Right-handed alpha
Helix 27
37
D
249 257Right-handed alpha
Helix 28
38
D
257 263Right-handed alpha
Helix 29
39
D
295 313Right-handed alpha
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There are 9 sheets in PDB entry 3JY6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 104first strand
Strand 2
A
69 74parallel
Strand 3
A
126 130parallel
Strand 4
A
148 151parallel
Strand 5
A
162 164parallel
Strand 6
A
320 322parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 218first strand
Strand 2
A
185 191parallel
Strand 3
A
243 247parallel
Strand 4
A
271 275parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
326 328anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 104first strand
Strand 2
B
69 74parallel
Strand 3
B
126 130parallel
Strand 4
B
148 151parallel
Strand 5
B
162 165parallel
Strand 6
B
320 323parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 218first strand
Strand 2
B
185 191parallel
Strand 3
B
243 247parallel
Strand 4
B
271 275parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 293first strand
Strand 2
B
326 328anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 104first strand
Strand 2
D
69 74parallel
Strand 3
D
126 129parallel
Strand 4
D
148 151parallel
Strand 5
D
162 165parallel
Strand 6
D
320 323parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 218first strand
Strand 2
D
185 191parallel
Strand 3
D
243 247parallel
Strand 4
D
271 275parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
291 293first strand
Strand 2
D
326 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il