Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYB entry

There are 2 chains in PDB entry 3JYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 48GLU 185
B
 GLN 48GLU 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3JYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 67Right-handed alpha
Helix 2
2
A
68 72Right-handed 310
Helix 3
3
A
178 182Right-handed alpha
Helix 4
4
B
61 66Right-handed alpha
Helix 5
5
B
67 72Right-handed 310
Helix 6
6
B
178 183Right-handed alpha
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There are 4 sheets in PDB entry 3JYB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
50 55anti-parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
157 164anti-parallel
Strand 5
A
113 120anti-parallel
Strand 6
A
123 130anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
169 177anti-parallel
Strand 3
A
102 107anti-parallel
Strand 4
A
146 150anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
157 164anti-parallel
Strand 5
B
113 120anti-parallel
Strand 6
B
123 130anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
169 177anti-parallel
Strand 3
B
102 107anti-parallel
Strand 4
B
146 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il