Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYF entry

There are 2 chains in PDB entry 3JYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4LYS 339
B
 ALA 4SER 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3JYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 50Right-handed alpha
Helix 2
2
A
66 76Right-handed alpha
Helix 3
3
A
83 90Right-handed alpha
Helix 4
4
A
100 105Right-handed 310
Helix 5
5
A
107 117Right-handed alpha
Helix 6
6
A
168 173Right-handed alpha
Helix 7
7
A
173 178Right-handed alpha
Helix 8
8
A
185 200Right-handed alpha
Helix 9
9
A
225 230Right-handed alpha
Helix 10
10
A
249 253Right-handed 310
Helix 11
11
A
319 339Right-handed alpha
Helix 12
12
B
36 50Right-handed alpha
Helix 13
13
B
66 76Right-handed alpha
Helix 14
14
B
83 90Right-handed alpha
Helix 15
15
B
100 105Right-handed 310
Helix 16
16
B
107 118Right-handed alpha
Helix 17
17
B
168 173Right-handed alpha
Helix 18
18
B
173 178Right-handed alpha
Helix 19
19
B
185 200Right-handed alpha
Helix 20
20
B
225 230Right-handed alpha
Helix 21
21
B
249 253Right-handed 310
Helix 22
22
B
319 338Right-handed alpha
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There are 12 sheets in PDB entry 3JYF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
96 98parallel
Strand 3
A
54 58parallel
Strand 4
A
6 14parallel
Strand 5
A
279 288anti-parallel
Strand 6
A
295 305anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
30 31anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
181 183anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 148first strand
Strand 2
A
154 164anti-parallel
Strand 3
A
204 209parallel
Strand 4
A
237 240parallel
Strand 5
A
268 273parallel
Strand 6
A
246 247anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 148first strand
Strand 2
A
154 164anti-parallel
Strand 3
A
204 209parallel
Strand 4
A
237 240parallel
Strand 5
A
268 273parallel
Strand 6
A
264 265anti-parallel
Strand 7
A
258 259anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
313 314anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
96 98parallel
Strand 3
B
54 58parallel
Strand 4
B
6 14parallel
Strand 5
B
279 288anti-parallel
Strand 6
B
295 305anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
30 31anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
181 183anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 148first strand
Strand 2
B
154 164anti-parallel
Strand 3
B
204 209parallel
Strand 4
B
237 239parallel
Strand 5
B
268 273parallel
Strand 6
B
246 247anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 148first strand
Strand 2
B
154 164anti-parallel
Strand 3
B
204 209parallel
Strand 4
B
237 239parallel
Strand 5
B
268 273parallel
Strand 6
B
264 265anti-parallel
Strand 7
B
258 259anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
313 314anti-parallel
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