Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYG entry

There are 6 chains in PDB entry 3JYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 179
B
 SER 0GLU 179
C
 SER 0GLU 179
D
 SER 0GLU 179
E
 SER 0GLU 179
F
 SER 0GLU 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3JYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed alpha
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
60 63Right-handed 310
Helix 4
4
A
64 75Right-handed alpha
Helix 5
5
A
87 92Right-handed alpha
Helix 6
6
A
93 96Right-handed 310
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
120 129Right-handed alpha
Helix 9
9
A
138 154Right-handed alpha
Helix 10
10
A
155 158Right-handed 310
Helix 11
11
B
23 28Right-handed alpha
Helix 12
12
B
32 36Right-handed 310
Helix 13
13
B
60 63Right-handed 310
Helix 14
14
B
64 75Right-handed alpha
Helix 15
15
B
87 92Right-handed alpha
Helix 16
16
B
93 96Right-handed 310
Helix 17
17
B
113 117Right-handed 310
Helix 18
18
B
120 129Right-handed alpha
Helix 19
19
B
138 152Right-handed alpha
Helix 20
20
B
154 158Right-handed 310
Helix 21
21
C
23 28Right-handed alpha
Helix 22
22
C
32 36Right-handed 310
Helix 23
23
C
60 63Right-handed 310
Helix 24
24
C
64 75Right-handed alpha
Helix 25
25
C
87 92Right-handed alpha
Helix 26
26
C
93 96Right-handed 310
Helix 27
27
C
113 117Right-handed 310
Helix 28
28
C
120 129Right-handed alpha
Helix 29
29
C
138 155Right-handed alpha
Helix 30
30
C
156 158Right-handed 310
Helix 31
31
D
23 28Right-handed alpha
Helix 32
32
D
32 36Right-handed 310
Helix 33
33
D
60 63Right-handed 310
Helix 34
34
D
64 75Right-handed alpha
Helix 35
35
D
87 92Right-handed alpha
Helix 36
36
D
93 96Right-handed 310
Helix 37
37
D
113 117Right-handed 310
Helix 38
38
D
120 129Right-handed alpha
Helix 39
39
D
138 155Right-handed alpha
Helix 40
40
D
156 158Right-handed 310
Helix 41
41
E
23 28Right-handed alpha
Helix 42
42
E
32 36Right-handed 310
Helix 43
43
E
60 63Right-handed 310
Helix 44
44
E
64 75Right-handed alpha
Helix 45
45
E
87 92Right-handed alpha
Helix 46
46
E
93 96Right-handed 310
Helix 47
47
E
113 117Right-handed 310
Helix 48
48
E
120 129Right-handed alpha
Helix 49
49
E
138 155Right-handed alpha
Helix 50
50
E
156 158Right-handed 310
Helix 51
51
F
23 28Right-handed alpha
Helix 52
52
F
32 36Right-handed 310
Helix 53
53
F
60 63Right-handed 310
Helix 54
54
F
64 75Right-handed alpha
Helix 55
55
F
87 92Right-handed alpha
Helix 56
56
F
93 96Right-handed 310
Helix 57
57
F
113 117Right-handed 310
Helix 58
58
F
120 129Right-handed alpha
Helix 59
59
F
138 155Right-handed alpha
Helix 60
60
F
156 158Right-handed 310
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There are 9 sheets in PDB entry 3JYG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
108 111anti-parallel
Strand 3
A
130 133anti-parallel
Strand 4
A
78 82parallel
Strand 5
A
1 15parallel
Strand 6
A
38 50anti-parallel
Strand 7
A
160 169anti-parallel
Strand 8
A
172 178anti-parallel
Strand 9
B
1 15anti-parallel
Strand 10
B
38 50anti-parallel
Strand 11
B
160 169anti-parallel
Strand 12
B
172 178anti-parallel
Strand 13
E
1 15anti-parallel
Strand 14
E
78 82parallel
Strand 15
E
130 133parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 15first strand
Strand 2
E
172 178anti-parallel
Strand 3
E
160 169anti-parallel
Strand 4
E
38 50anti-parallel
Strand 5
E
1 15anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 15first strand
Strand 2
B
78 82parallel
Strand 3
B
130 133parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
109 111anti-parallel
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There are 15 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 103first strand
Strand 2
D
108 111anti-parallel
Strand 3
D
130 133anti-parallel
Strand 4
D
78 82parallel
Strand 5
D
1 15parallel
Strand 6
D
38 50anti-parallel
Strand 7
D
160 169anti-parallel
Strand 8
D
172 178anti-parallel
Strand 9
C
1 15anti-parallel
Strand 10
C
38 50anti-parallel
Strand 11
C
160 169anti-parallel
Strand 12
C
172 178anti-parallel
Strand 13
F
1 15anti-parallel
Strand 14
F
78 82parallel
Strand 15
F
130 133parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1 15first strand
Strand 2
F
172 178anti-parallel
Strand 3
F
160 169anti-parallel
Strand 4
F
38 50anti-parallel
Strand 5
F
1 15anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 15first strand
Strand 2
C
78 82parallel
Strand 3
C
130 133parallel
Strand 4
C
108 111anti-parallel
Strand 5
C
101 103anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 103first strand
Strand 2
E
109 111anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
101 103first strand
Strand 2
F
109 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il