Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JYH entry

There are 4 chains in PDB entry 3JYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 28	GLU 479
B	ASP 28	GLU 479
C	ASP 28	ARG 478
D	ASP 28	ARG 477

There are 76 helices in PDB entry 3JYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	80	88	Right-handed alpha
Helix 2	2	A	88	99	Right-handed alpha
Helix 3	3	A	116	122	Right-handed 310
Helix 4	4	A	130	149	Right-handed alpha
Helix 5	5	A	162	175	Right-handed alpha
Helix 6	6	A	190	194	Right-handed 310
Helix 7	7	A	199	213	Right-handed alpha
Helix 8	8	A	213	233	Right-handed alpha
Helix 9	9	A	235	244	Right-handed alpha
Helix 10	10	A	251	272	Right-handed alpha
Helix 11	11	A	287	298	Right-handed alpha
Helix 12	12	A	301	315	Right-handed alpha
Helix 13	13	A	324	329	Right-handed alpha
Helix 14	14	A	341	352	Right-handed alpha
Helix 15	15	A	374	387	Right-handed alpha
Helix 16	16	A	393	400	Right-handed alpha
Helix 17	17	A	418	424	Right-handed 310
Helix 18	18	A	444	448	Right-handed 310
Helix 19	19	A	455	479	Right-handed alpha
Helix 20	20	B	80	88	Right-handed alpha
Helix 21	21	B	88	99	Right-handed alpha
Helix 22	22	B	116	122	Right-handed 310
Helix 23	23	B	130	149	Right-handed alpha
Helix 24	24	B	162	175	Right-handed alpha
Helix 25	25	B	190	194	Right-handed 310
Helix 26	26	B	199	213	Right-handed alpha
Helix 27	27	B	213	233	Right-handed alpha
Helix 28	28	B	235	244	Right-handed alpha
Helix 29	29	B	251	272	Right-handed alpha
Helix 30	30	B	287	298	Right-handed alpha
Helix 31	31	B	301	315	Right-handed alpha
Helix 32	32	B	324	329	Right-handed alpha
Helix 33	33	B	341	352	Right-handed alpha
Helix 34	34	B	374	387	Right-handed alpha
Helix 35	35	B	393	400	Right-handed alpha
Helix 36	36	B	420	424	Right-handed 310
Helix 37	37	B	444	448	Right-handed 310
Helix 38	38	B	455	479	Right-handed alpha
Helix 39	39	C	80	88	Right-handed alpha
Helix 40	40	C	88	99	Right-handed alpha
Helix 41	41	C	116	122	Right-handed 310
Helix 42	42	C	125	129	Right-handed 310
Helix 43	43	C	130	149	Right-handed alpha
Helix 44	44	C	162	175	Right-handed alpha
Helix 45	45	C	190	194	Right-handed 310
Helix 46	46	C	199	213	Right-handed alpha
Helix 47	47	C	213	233	Right-handed alpha
Helix 48	48	C	235	244	Right-handed alpha
Helix 49	49	C	251	272	Right-handed alpha
Helix 50	50	C	287	297	Right-handed alpha
Helix 51	51	C	301	315	Right-handed alpha
Helix 52	52	C	341	352	Right-handed alpha
Helix 53	53	C	374	387	Right-handed alpha
Helix 54	54	C	393	400	Right-handed alpha
Helix 55	55	C	420	424	Right-handed 310
Helix 56	56	C	444	448	Right-handed 310
Helix 57	57	C	455	477	Right-handed alpha
Helix 58	58	D	80	88	Right-handed alpha
Helix 59	59	D	88	99	Right-handed alpha
Helix 60	60	D	116	122	Right-handed 310
Helix 61	61	D	130	150	Right-handed alpha
Helix 62	62	D	162	175	Right-handed alpha
Helix 63	63	D	188	193	Right-handed alpha
Helix 64	64	D	199	213	Right-handed alpha
Helix 65	65	D	213	233	Right-handed alpha
Helix 66	66	D	235	244	Right-handed alpha
Helix 67	67	D	251	272	Right-handed alpha
Helix 68	68	D	287	298	Right-handed alpha
Helix 69	69	D	301	315	Right-handed alpha
Helix 70	70	D	324	329	Right-handed alpha
Helix 71	71	D	341	352	Right-handed alpha
Helix 72	72	D	374	387	Right-handed alpha
Helix 73	73	D	393	400	Right-handed alpha
Helix 74	74	D	418	424	Right-handed 310
Helix 75	75	D	444	448	Right-handed 310
Helix 76	76	D	455	477	Right-handed alpha

There are 8 sheets in PDB entry 3JYH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	39	first strand
Strand 2	A	52	60	anti-parallel
Strand 3	A	101	105	anti-parallel
Strand 4	A	71	75	parallel
Strand 5	A	156	161	parallel
Strand 6	A	181	185	parallel
Strand 7	A	410	415	parallel
Strand 8	A	433	438	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	283	284	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	39	first strand
Strand 2	B	52	60	anti-parallel
Strand 3	B	101	105	anti-parallel
Strand 4	B	71	75	parallel
Strand 5	B	156	161	parallel
Strand 6	B	181	185	parallel
Strand 7	B	410	415	parallel
Strand 8	B	433	438	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	283	284	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	39	first strand
Strand 2	C	52	60	anti-parallel
Strand 3	C	101	105	anti-parallel
Strand 4	C	71	75	parallel
Strand 5	C	156	161	parallel
Strand 6	C	181	185	parallel
Strand 7	C	410	415	parallel
Strand 8	C	433	438	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	283	284	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	39	first strand
Strand 2	D	52	60	anti-parallel
Strand 3	D	101	105	anti-parallel
Strand 4	D	71	75	parallel
Strand 5	D	156	161	parallel
Strand 6	D	181	185	parallel
Strand 7	D	410	415	parallel
Strand 8	D	433	438	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	283	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYH