Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYI entry

There are 6 chains in PDB entry 3JYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 26TRP 288
B
 HIS 26TRP 288
C
 HIS 26TRP 288
D
 HIS 26TRP 288
E
 HIS 26TRP 288
F
 HIS 26TRP 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 3JYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
71 86Right-handed alpha
Helix 3
3
A
98 102Right-handed 310
Helix 4
4
A
108 112Right-handed 310
Helix 5
5
A
119 129Right-handed alpha
Helix 6
6
A
131 143Right-handed alpha
Helix 7
7
A
144 155Right-handed alpha
Helix 8
8
A
167 171Right-handed 310
Helix 9
9
A
182 196Right-handed alpha
Helix 10
10
A
200 213Right-handed alpha
Helix 11
11
A
220 225Right-handed 310
Helix 12
12
A
269 287Right-handed alpha
Helix 13
13
B
26 41Right-handed alpha
Helix 14
14
B
71 86Right-handed alpha
Helix 15
15
B
98 102Right-handed 310
Helix 16
16
B
108 112Right-handed 310
Helix 17
17
B
119 129Right-handed alpha
Helix 18
18
B
131 143Right-handed alpha
Helix 19
19
B
144 155Right-handed alpha
Helix 20
20
B
167 171Right-handed 310
Helix 21
21
B
182 196Right-handed alpha
Helix 22
22
B
200 213Right-handed alpha
Helix 23
23
B
220 225Right-handed 310
Helix 24
24
B
269 287Right-handed alpha
Helix 25
25
C
26 41Right-handed alpha
Helix 26
26
C
71 86Right-handed alpha
Helix 27
27
C
98 102Right-handed 310
Helix 28
28
C
108 112Right-handed 310
Helix 29
29
C
119 129Right-handed alpha
Helix 30
30
C
131 143Right-handed alpha
Helix 31
31
C
144 155Right-handed alpha
Helix 32
32
C
167 171Right-handed 310
Helix 33
33
C
182 196Right-handed alpha
Helix 34
34
C
200 213Right-handed alpha
Helix 35
35
C
220 225Right-handed 310
Helix 36
36
C
269 287Right-handed alpha
Helix 37
37
D
26 41Right-handed alpha
Helix 38
38
D
71 86Right-handed alpha
Helix 39
39
D
98 102Right-handed 310
Helix 40
40
D
108 112Right-handed 310
Helix 41
41
D
119 130Right-handed alpha
Helix 42
42
D
131 143Right-handed alpha
Helix 43
43
D
144 155Right-handed alpha
Helix 44
44
D
167 171Right-handed 310
Helix 45
45
D
182 196Right-handed alpha
Helix 46
46
D
200 213Right-handed alpha
Helix 47
47
D
220 225Right-handed 310
Helix 48
48
D
269 287Right-handed alpha
Helix 49
49
E
26 41Right-handed alpha
Helix 50
50
E
71 86Right-handed alpha
Helix 51
51
E
98 102Right-handed 310
Helix 52
52
E
108 112Right-handed 310
Helix 53
53
E
119 129Right-handed alpha
Helix 54
54
E
131 143Right-handed alpha
Helix 55
55
E
144 155Right-handed alpha
Helix 56
56
E
167 171Right-handed 310
Helix 57
57
E
182 196Right-handed alpha
Helix 58
58
E
200 213Right-handed alpha
Helix 59
59
E
220 225Right-handed 310
Helix 60
60
E
269 287Right-handed alpha
Helix 61
61
F
26 41Right-handed alpha
Helix 62
62
F
71 86Right-handed alpha
Helix 63
63
F
98 102Right-handed 310
Helix 64
64
F
108 112Right-handed 310
Helix 65
65
F
119 129Right-handed alpha
Helix 66
66
F
131 143Right-handed alpha
Helix 67
67
F
144 155Right-handed alpha
Helix 68
68
F
167 171Right-handed 310
Helix 69
69
F
182 196Right-handed alpha
Helix 70
70
F
200 213Right-handed alpha
Helix 71
71
F
220 225Right-handed 310
Helix 72
72
F
269 287Right-handed alpha
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There are 18 sheets in PDB entry 3JYI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
230 237anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
43 50anti-parallel
Strand 3
B
257 264anti-parallel
Strand 4
B
243 250anti-parallel
Strand 5
B
230 237anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
117 118anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 60first strand
Strand 2
C
43 50anti-parallel
Strand 3
C
257 264anti-parallel
Strand 4
C
243 250anti-parallel
Strand 5
C
230 237anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
117 118anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 60first strand
Strand 2
D
43 50anti-parallel
Strand 3
D
257 264anti-parallel
Strand 4
D
243 250anti-parallel
Strand 5
D
230 237anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
180 181anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 95first strand
Strand 2
D
117 118anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 60first strand
Strand 2
E
43 50anti-parallel
Strand 3
E
257 264anti-parallel
Strand 4
E
243 250anti-parallel
Strand 5
E
230 237anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 67first strand
Strand 2
E
180 181anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 95first strand
Strand 2
E
117 118anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
56 60first strand
Strand 2
F
43 50anti-parallel
Strand 3
F
257 264anti-parallel
Strand 4
F
243 250anti-parallel
Strand 5
F
230 237anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
66 67first strand
Strand 2
F
180 181anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
94 95first strand
Strand 2
F
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il