Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYM entry

There are 2 chains in PDB entry 3JYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33ASP 386
B
 GLY 33ASP 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3JYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
99 107Right-handed 310
Helix 2
2
A
204 206Right-handed 310
Helix 3
3
A
209 217Right-handed alpha
Helix 4
4
A
231 234Right-handed 310
Helix 5
5
A
331 340Right-handed alpha
Helix 6
6
A
352 356Right-handed 310
Helix 7
7
B
97 105Right-handed alpha
Helix 8
8
B
204 206Right-handed 310
Helix 9
9
B
209 217Right-handed alpha
Helix 10
10
B
231 234Right-handed 310
Helix 11
11
B
331 339Right-handed alpha
Helix 12
12
B
352 356Right-handed 310
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There are 10 sheets in PDB entry 3JYM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
139 148anti-parallel
Strand 4
A
62 66anti-parallel
Strand 5
A
89 90anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
255 265anti-parallel
Strand 5
A
178 187anti-parallel
Strand 6
A
192 202anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
276 282anti-parallel
Strand 3
A
346 351anti-parallel
Strand 4
A
374 384anti-parallel
Strand 5
A
295 303anti-parallel
Strand 6
A
309 313anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
276 282anti-parallel
Strand 3
A
346 351anti-parallel
Strand 4
A
374 384anti-parallel
Strand 5
A
295 303anti-parallel
Strand 6
A
321 324anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
367 368anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
138 148anti-parallel
Strand 4
B
62 68anti-parallel
Strand 5
B
89 90anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
159 165anti-parallel
Strand 3
B
224 229anti-parallel
Strand 4
B
255 265anti-parallel
Strand 5
B
178 187anti-parallel
Strand 6
B
192 202anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 270first strand
Strand 2
B
276 282anti-parallel
Strand 3
B
346 351anti-parallel
Strand 4
B
374 384anti-parallel
Strand 5
B
295 304anti-parallel
Strand 6
B
309 313anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 270first strand
Strand 2
B
276 282anti-parallel
Strand 3
B
346 351anti-parallel
Strand 4
B
374 384anti-parallel
Strand 5
B
295 304anti-parallel
Strand 6
B
321 324anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 363first strand
Strand 2
B
367 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il