Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYS entry

There is 1 chain in PDB entry 3JYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 38TYR 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3JYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 57Right-handed alpha
Helix 2
2
A
80 91Right-handed alpha
Helix 3
3
A
102 111Right-handed alpha
Helix 4
4
A
118 142Right-handed alpha
Helix 5
5
A
143 145Right-handed 310
Helix 6
6
A
150 174Right-handed alpha
Helix 7
7
A
192 208Right-handed alpha
Helix 8
8
A
209 211Right-handed 310
Helix 9
9
A
222 236Right-handed alpha
Helix 10
10
A
236 242Right-handed alpha
Helix 11
11
A
245 259Right-handed alpha
Helix 12
12
A
267 272Right-handed 310
Helix 13
13
A
278 283Right-handed alpha
Helix 14
14
A
299 307Right-handed alpha
Helix 15
15
A
313 322Right-handed alpha
Helix 16
16
A
333 339Right-handed alpha
Helix 17
17
A
349 353Right-handed 310
Helix 18
18
A
412 425Right-handed alpha
Helix 19
19
A
430 447Right-handed alpha
Helix 20
20
A
454 460Right-handed alpha
Helix 21
21
A
463 475Right-handed alpha
Helix 22
22
A
479 487Right-handed alpha
Helix 23
23
A
499 503Right-handed 310
Helix 24
24
A
510 515Right-handed 310
Helix 25
25
A
519 526Right-handed alpha
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There are 3 sheets in PDB entry 3JYS. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
330 331anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
407 411anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
383 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il