Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYY entry

There are 2 chains in PDB entry 3JYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 267
B
 LEU 2GLU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3JYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
28 32Right-handed 310
Helix 3
3
A
49 52Right-handed 310
Helix 4
4
A
56 65Right-handed alpha
Helix 5
5
A
96 107Right-handed 310
Helix 6
6
A
112 116Right-handed alpha
Helix 7
7
A
123 133Right-handed alpha
Helix 8
8
A
141 166Right-handed alpha
Helix 9
9
A
167 190Right-handed alpha
Helix 10
10
A
202 207Right-handed alpha
Helix 11
11
A
208 217Right-handed alpha
Helix 12
12
A
223 246Right-handed alpha
Helix 13
13
A
254 265Right-handed alpha
Helix 14
14
B
2 18Right-handed alpha
Helix 15
15
B
28 32Right-handed 310
Helix 16
16
B
49 52Right-handed 310
Helix 17
17
B
56 65Right-handed alpha
Helix 18
18
B
96 107Right-handed 310
Helix 19
19
B
113 115Right-handed 310
Helix 20
20
B
123 133Right-handed alpha
Helix 21
21
B
141 166Right-handed alpha
Helix 22
22
B
167 190Right-handed alpha
Helix 23
23
B
202 207Right-handed alpha
Helix 24
24
B
208 217Right-handed alpha
Helix 25
25
B
223 246Right-handed alpha
Helix 26
26
B
254 265Right-handed alpha
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There are 2 sheets in PDB entry 3JYY. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
41 47parallel
Strand 5
A
21 26anti-parallel
Strand 6
A
117 120anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
41 47parallel
Strand 5
B
21 26anti-parallel
Strand 6
B
117 120anti-parallel
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