Analysis of interatomic Contacts of Structural Units in PDB entry:
3JZ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JZ4 entry

There are 4 chains in PDB entry 3JZ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LEU 481
B
 LYS 1LEU 481
C
 LYS 1LEU 481
D
 LYS 1LEU 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 3JZ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
45 66Right-handed alpha
Helix 3
3
A
67 85Right-handed alpha
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
100 122Right-handed alpha
Helix 6
6
A
123 125Right-handed 310
Helix 7
7
A
159 173Right-handed alpha
Helix 8
8
A
185 199Right-handed alpha
Helix 9
9
A
212 222Right-handed alpha
Helix 10
10
A
233 245Right-handed alpha
Helix 11
11
A
268 282Right-handed alpha
Helix 12
12
A
283 286Right-handed 310
Helix 13
13
A
300 313Right-handed alpha
Helix 14
14
A
332 349Right-handed alpha
Helix 15
15
A
379 383Right-handed 310
Helix 16
16
A
398 408Right-handed alpha
Helix 17
17
A
421 432Right-handed alpha
Helix 18
18
A
454 456Right-handed 310
Helix 19
19
A
463 470Right-handed alpha
Helix 20
20
B
4 8Right-handed 310
Helix 21
21
B
45 66Right-handed alpha
Helix 22
22
B
67 85Right-handed alpha
Helix 23
23
B
85 98Right-handed alpha
Helix 24
24
B
100 122Right-handed alpha
Helix 25
25
B
123 125Right-handed 310
Helix 26
26
B
159 173Right-handed alpha
Helix 27
27
B
185 199Right-handed alpha
Helix 28
28
B
211 222Right-handed alpha
Helix 29
29
B
233 245Right-handed alpha
Helix 30
30
B
246 248Right-handed 310
Helix 31
31
B
268 282Right-handed alpha
Helix 32
32
B
283 286Right-handed 310
Helix 33
33
B
300 313Right-handed alpha
Helix 34
34
B
332 349Right-handed alpha
Helix 35
35
B
379 384Right-handed alpha
Helix 36
36
B
398 407Right-handed alpha
Helix 37
37
B
421 432Right-handed alpha
Helix 38
38
B
454 456Right-handed 310
Helix 39
39
B
465 470Right-handed 310
Helix 40
40
C
4 8Right-handed 310
Helix 41
41
C
45 65Right-handed alpha
Helix 42
42
C
67 85Right-handed alpha
Helix 43
43
C
85 98Right-handed alpha
Helix 44
44
C
100 122Right-handed alpha
Helix 45
45
C
123 125Right-handed 310
Helix 46
46
C
159 173Right-handed alpha
Helix 47
47
C
184 199Right-handed alpha
Helix 48
48
C
211 222Right-handed alpha
Helix 49
49
C
233 245Right-handed alpha
Helix 50
50
C
268 282Right-handed alpha
Helix 51
51
C
283 286Right-handed 310
Helix 52
52
C
300 313Right-handed alpha
Helix 53
53
C
332 349Right-handed alpha
Helix 54
54
C
379 384Right-handed alpha
Helix 55
55
C
398 408Right-handed alpha
Helix 56
56
C
421 432Right-handed alpha
Helix 57
57
C
454 456Right-handed 310
Helix 58
58
C
463 470Right-handed alpha
Helix 59
59
D
4 8Right-handed 310
Helix 60
60
D
45 65Right-handed alpha
Helix 61
61
D
67 85Right-handed alpha
Helix 62
62
D
85 98Right-handed alpha
Helix 63
63
D
100 122Right-handed alpha
Helix 64
64
D
123 125Right-handed 310
Helix 65
65
D
159 173Right-handed alpha
Helix 66
66
D
185 199Right-handed alpha
Helix 67
67
D
212 222Right-handed alpha
Helix 68
68
D
233 245Right-handed alpha
Helix 69
69
D
268 282Right-handed alpha
Helix 70
70
D
283 286Right-handed 310
Helix 71
71
D
300 312Right-handed alpha
Helix 72
72
D
313 315Right-handed 310
Helix 73
73
D
332 349Right-handed alpha
Helix 74
74
D
379 383Right-handed 310
Helix 75
75
D
398 408Right-handed alpha
Helix 76
76
D
421 432Right-handed alpha
Helix 77
77
D
454 456Right-handed 310
Helix 78
78
D
463 468Right-handed alpha
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There are 14 sheets in PDB entry 3JZ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
17 19anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
37 42anti-parallel
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There are 20 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 355first strand
Strand 2
B
370 373anti-parallel
Strand 3
B
390 396parallel
Strand 4
B
291 297parallel
Strand 5
B
259 263parallel
Strand 6
B
414 418parallel
Strand 7
B
436 439parallel
Strand 8
A
472 480parallel
Strand 9
A
137 145anti-parallel
Strand 10
A
127 130anti-parallel
Strand 11
C
127 130anti-parallel
Strand 12
C
137 145anti-parallel
Strand 13
C
472 480anti-parallel
Strand 14
D
436 439parallel
Strand 15
D
414 418parallel
Strand 16
D
259 263parallel
Strand 17
D
291 297parallel
Strand 18
D
390 396parallel
Strand 19
D
370 373parallel
Strand 20
D
352 355anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
175 179parallel
Strand 3
A
148 152parallel
Strand 4
A
225 231parallel
Strand 5
A
250 254parallel
Strand 6
A
458 459anti-parallel
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There are 20 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
370 373anti-parallel
Strand 3
A
390 396parallel
Strand 4
A
291 297parallel
Strand 5
A
259 263parallel
Strand 6
A
414 418parallel
Strand 7
A
436 439parallel
Strand 8
B
472 480parallel
Strand 9
B
137 145anti-parallel
Strand 10
B
127 130anti-parallel
Strand 11
D
127 130anti-parallel
Strand 12
D
137 145anti-parallel
Strand 13
D
472 480anti-parallel
Strand 14
C
436 439parallel
Strand 15
C
414 418parallel
Strand 16
C
259 263parallel
Strand 17
C
291 297parallel
Strand 18
C
390 396parallel
Strand 19
C
370 373parallel
Strand 20
C
352 355anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
17 19anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
37 42anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
175 179parallel
Strand 3
B
148 152parallel
Strand 4
B
225 231parallel
Strand 5
B
250 254parallel
Strand 6
B
458 459anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
17 19anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 30first strand
Strand 2
C
37 42anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 207first strand
Strand 2
C
175 179parallel
Strand 3
C
148 152parallel
Strand 4
C
225 231parallel
Strand 5
C
250 254parallel
Strand 6
C
458 459anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 14first strand
Strand 2
D
17 19anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 30first strand
Strand 2
D
37 42anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
205 207first strand
Strand 2
D
175 179parallel
Strand 3
D
148 152parallel
Strand 4
D
225 231parallel
Strand 5
D
250 254parallel
Strand 6
D
458 459anti-parallel
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