Analysis of interatomic Contacts of Structural Units in PDB entry:
3JZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JZD entry

There are 4 chains in PDB entry 3JZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ASP 357
B
 SER 4ASP 357
C
 SER 4ASP 357
D
 SER 4ASP 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 3JZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 24Right-handed 310
Helix 2
2
A
25 33Right-handed alpha
Helix 3
3
A
43 45Right-handed 310
Helix 4
4
A
46 58Right-handed alpha
Helix 5
5
A
73 88Right-handed alpha
Helix 6
6
A
97 112Right-handed alpha
Helix 7
7
A
124 128Right-handed 310
Helix 8
8
A
145 148Right-handed 310
Helix 9
9
A
155 160Right-handed 310
Helix 10
10
A
163 182Right-handed alpha
Helix 11
11
A
188 212Right-handed alpha
Helix 12
12
A
215 236Right-handed alpha
Helix 13
13
A
239 253Right-handed alpha
Helix 14
14
A
255 272Right-handed alpha
Helix 15
15
A
275 287Right-handed alpha
Helix 16
16
A
292 304Right-handed alpha
Helix 17
17
A
309 314Right-handed 310
Helix 18
18
A
316 318Right-handed 310
Helix 19
19
A
319 328Right-handed alpha
Helix 20
20
A
339 353Right-handed alpha
Helix 21
21
B
21 24Right-handed 310
Helix 22
22
B
25 33Right-handed alpha
Helix 23
23
B
43 45Right-handed 310
Helix 24
24
B
46 58Right-handed alpha
Helix 25
25
B
73 88Right-handed alpha
Helix 26
26
B
97 112Right-handed alpha
Helix 27
27
B
124 128Right-handed 310
Helix 28
28
B
145 148Right-handed 310
Helix 29
29
B
155 160Right-handed 310
Helix 30
30
B
163 182Right-handed alpha
Helix 31
31
B
188 212Right-handed alpha
Helix 32
32
B
215 236Right-handed alpha
Helix 33
33
B
239 253Right-handed alpha
Helix 34
34
B
255 272Right-handed alpha
Helix 35
35
B
275 287Right-handed alpha
Helix 36
36
B
292 304Right-handed alpha
Helix 37
37
B
309 314Right-handed 310
Helix 38
38
B
316 318Right-handed 310
Helix 39
39
B
319 328Right-handed alpha
Helix 40
40
B
339 353Right-handed alpha
Helix 41
41
C
21 24Right-handed 310
Helix 42
42
C
25 33Right-handed alpha
Helix 43
43
C
43 45Right-handed 310
Helix 44
44
C
46 58Right-handed alpha
Helix 45
45
C
73 88Right-handed alpha
Helix 46
46
C
97 112Right-handed alpha
Helix 47
47
C
124 128Right-handed 310
Helix 48
48
C
145 148Right-handed 310
Helix 49
49
C
155 160Right-handed 310
Helix 50
50
C
163 182Right-handed alpha
Helix 51
51
C
188 212Right-handed alpha
Helix 52
52
C
215 234Right-handed alpha
Helix 53
53
C
239 252Right-handed alpha
Helix 54
54
C
255 273Right-handed alpha
Helix 55
55
C
275 287Right-handed alpha
Helix 56
56
C
292 304Right-handed alpha
Helix 57
57
C
309 314Right-handed 310
Helix 58
58
C
316 318Right-handed 310
Helix 59
59
C
319 330Right-handed alpha
Helix 60
60
C
339 353Right-handed alpha
Helix 61
61
D
21 24Right-handed 310
Helix 62
62
D
25 33Right-handed alpha
Helix 63
63
D
43 45Right-handed 310
Helix 64
64
D
46 58Right-handed alpha
Helix 65
65
D
73 88Right-handed alpha
Helix 66
66
D
97 112Right-handed alpha
Helix 67
67
D
124 128Right-handed 310
Helix 68
68
D
155 160Right-handed 310
Helix 69
69
D
163 182Right-handed alpha
Helix 70
70
D
188 212Right-handed alpha
Helix 71
71
D
215 236Right-handed alpha
Helix 72
72
D
239 253Right-handed alpha
Helix 73
73
D
255 272Right-handed alpha
Helix 74
74
D
275 287Right-handed alpha
Helix 75
75
D
292 304Right-handed alpha
Helix 76
76
D
309 313Right-handed 310
Helix 77
77
D
316 318Right-handed 310
Helix 78
78
D
319 328Right-handed alpha
Helix 79
79
D
339 353Right-handed alpha
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There are 8 sheets in PDB entry 3JZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
B
14 18anti-parallel
Strand 3
B
151 154parallel
Strand 4
B
115 119parallel
Strand 5
B
91 96parallel
Strand 6
B
38 41parallel
Strand 7
B
61 65parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
38 41parallel
Strand 3
A
91 96parallel
Strand 4
A
115 119parallel
Strand 5
A
151 154parallel
Strand 6
A
14 18parallel
Strand 7
B
7 11anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
138 143anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 135first strand
Strand 2
B
138 143anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 11first strand
Strand 2
D
14 18anti-parallel
Strand 3
D
151 154parallel
Strand 4
D
115 119parallel
Strand 5
D
91 96parallel
Strand 6
D
38 41parallel
Strand 7
D
61 65parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 65first strand
Strand 2
C
38 41parallel
Strand 3
C
91 96parallel
Strand 4
C
115 119parallel
Strand 5
C
151 154parallel
Strand 6
C
14 18parallel
Strand 7
D
7 11anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 135first strand
Strand 2
C
138 143anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 135first strand
Strand 2
D
138 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il