Analysis of interatomic Contacts of Structural Units in PDB entry:
3K05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K05 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 3K05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1891PRO 2083
B
 GLY 1890THR 2089
C
 GLN 140TYR 142
D
 GLN 140TYR 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3K05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1902 1912Right-handed alpha
Helix 2
2
A
1919 1923Right-handed 310
Helix 3
3
A
1934 1944Right-handed alpha
Helix 4
4
A
1949 1960Right-handed alpha
Helix 5
5
A
1965 1969Right-handed 310
Helix 6
6
A
1972 1980Right-handed alpha
Helix 7
7
A
1982 1993Right-handed alpha
Helix 8
8
A
2010 2021Right-handed alpha
Helix 9
9
A
2042 2048Right-handed 310
Helix 10
10
A
2049 2056Right-handed alpha
Helix 11
11
A
2062 2072Right-handed alpha
Helix 12
12
A
2075 2080Right-handed 310
Helix 13
13
B
1902 1912Right-handed alpha
Helix 14
14
B
1919 1923Right-handed 310
Helix 15
15
B
1934 1944Right-handed alpha
Helix 16
16
B
1950 1960Right-handed alpha
Helix 17
17
B
1965 1969Right-handed 310
Helix 18
18
B
1972 1980Right-handed alpha
Helix 19
19
B
1982 1993Right-handed alpha
Helix 20
20
B
2010 2021Right-handed alpha
Helix 21
21
B
2042 2048Right-handed 310
Helix 22
22
B
2049 2056Right-handed alpha
Helix 23
23
B
2062 2072Right-handed alpha
Helix 24
24
B
2075 2079Right-handed 310
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There are 4 sheets in PDB entry 3K05. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1915 1916first strand
Strand 2
A
1894 1897parallel
Strand 3
A
1925 1927parallel
Strand 4
A
1947 1948parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2024 2026first strand
Strand 2
A
2000 2003parallel
Strand 3
A
2037 2040parallel
Strand 4
A
2059 2060parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1915 1916first strand
Strand 2
B
1894 1897parallel
Strand 3
B
1925 1928parallel
Strand 4
B
1947 1949parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2024 2026first strand
Strand 2
B
2000 2003parallel
Strand 3
B
2037 2040parallel
Strand 4
B
2059 2060parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il